View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10723_high_2 (Length: 228)

Name: NF10723_high_2
Description: NF10723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10723_high_2
NF10723_high_2
[»] chr8 (17 HSPs)
chr8 (124-176)||(32722871-32722924)
chr8 (124-176)||(2433719-2433773)
chr8 (124-158)||(4052737-4052771)
chr8 (124-173)||(7766145-7766195)
chr8 (124-157)||(10605673-10605706)
chr8 (124-157)||(14148610-14148643)
chr8 (124-157)||(14148691-14148724)
chr8 (124-157)||(38656378-38656411)
chr8 (124-157)||(38798552-38798585)
chr8 (124-156)||(1047458-1047490)
chr8 (124-156)||(1770083-1770115)
chr8 (124-156)||(13013204-13013236)
chr8 (124-156)||(26615585-26615617)
chr8 (124-156)||(27141132-27141164)
chr8 (124-156)||(30465841-30465873)
chr8 (124-156)||(40668690-40668722)
chr8 (125-157)||(42668278-42668310)
[»] chr7 (10 HSPs)
chr7 (126-176)||(35471782-35471834)
chr7 (124-157)||(2394187-2394220)
chr7 (124-157)||(18803582-18803615)
chr7 (124-157)||(21804295-21804328)
chr7 (124-153)||(27247026-27247055)
chr7 (124-156)||(21707012-21707044)
chr7 (124-156)||(21973721-21973753)
chr7 (124-156)||(28555025-28555057)
chr7 (124-156)||(41320851-41320883)
chr7 (124-156)||(48154294-48154326)
[»] chr5 (16 HSPs)
chr5 (124-157)||(29096135-29096168)
chr5 (124-176)||(11875882-11875936)
chr5 (124-174)||(17229375-17229426)
chr5 (124-157)||(5160911-5160944)
chr5 (124-157)||(11875929-11875962)
chr5 (124-176)||(12272733-12272786)
chr5 (124-157)||(29654163-29654196)
chr5 (124-157)||(41460418-41460451)
chr5 (124-156)||(3971784-3971816)
chr5 (124-156)||(6516583-6516615)
chr5 (124-156)||(13408148-13408180)
chr5 (124-156)||(25564302-25564334)
chr5 (124-156)||(26402806-26402838)
chr5 (124-156)||(32400747-32400779)
chr5 (124-156)||(36177876-36177908)
chr5 (124-156)||(37445913-37445945)
[»] chr4 (18 HSPs)
chr4 (124-174)||(25593911-25593963)
chr4 (124-157)||(34100769-34100802)
chr4 (127-176)||(41827506-41827557)
chr4 (124-212)||(47098269-47098359)
chr4 (124-157)||(8168400-8168433)
chr4 (124-157)||(13030611-13030644)
chr4 (124-157)||(13482958-13482991)
chr4 (124-157)||(16946363-16946396)
chr4 (124-157)||(29146031-29146064)
chr4 (124-157)||(29963287-29963320)
chr4 (124-157)||(39407673-39407706)
chr4 (124-157)||(43440177-43440210)
chr4 (124-157)||(49333675-49333708)
chr4 (124-157)||(55881701-55881734)
chr4 (124-157)||(56302554-56302587)
chr4 (124-156)||(16078434-16078466)
chr4 (124-156)||(34374212-34374244)
chr4 (124-156)||(39652459-39652491)
[»] chr3 (18 HSPs)
chr3 (124-157)||(39176926-39176959)
chr3 (124-181)||(8015990-8016049)
chr3 (124-176)||(35317367-35317421)
chr3 (124-176)||(37671623-37671677)
chr3 (124-176)||(9693290-9693344)
chr3 (124-176)||(26370028-26370082)
chr3 (124-157)||(8150899-8150932)
chr3 (124-157)||(25588020-25588053)
chr3 (124-157)||(31311144-31311177)
chr3 (124-157)||(37671597-37671630)
chr3 (124-157)||(39176879-39176912)
chr3 (124-157)||(41992984-41993017)
chr3 (124-156)||(3918366-3918398)
chr3 (124-156)||(33254672-33254704)
chr3 (124-156)||(33463478-33463510)
chr3 (124-156)||(52169371-52169403)
chr3 (124-156)||(52252806-52252838)
chr3 (124-156)||(55379006-55379038)
[»] chr1 (19 HSPs)
chr1 (124-157)||(27494893-27494926)
chr1 (124-157)||(91545-91578)
chr1 (124-157)||(1607738-1607771)
chr1 (124-157)||(15600494-15600527)
chr1 (124-157)||(32924496-32924529)
chr1 (124-157)||(34941386-34941419)
chr1 (124-157)||(35796132-35796165)
chr1 (124-156)||(4618405-4618437)
chr1 (124-156)||(7236902-7236934)
chr1 (124-156)||(8760023-8760055)
chr1 (124-156)||(12300545-12300577)
chr1 (124-156)||(14083218-14083250)
chr1 (124-156)||(17632930-17632962)
chr1 (124-156)||(20754576-20754608)
chr1 (124-156)||(26821050-26821082)
chr1 (124-156)||(32589887-32589919)
chr1 (124-156)||(41885264-41885296)
chr1 (124-156)||(46947700-46947732)
chr1 (124-156)||(52510664-52510696)
[»] chr2 (14 HSPs)
chr2 (124-176)||(29387143-29387195)
chr2 (124-176)||(8811264-8811318)
chr2 (124-174)||(6649576-6649626)
chr2 (124-158)||(40073530-40073564)
chr2 (124-157)||(3623494-3623527)
chr2 (124-157)||(8811311-8811344)
chr2 (124-157)||(18381468-18381501)
chr2 (124-157)||(26062341-26062374)
chr2 (124-157)||(26068080-26068113)
chr2 (124-157)||(34129840-34129873)
chr2 (124-157)||(39751458-39751491)
chr2 (124-157)||(40141303-40141336)
chr2 (124-156)||(1378999-1379031)
chr2 (124-156)||(39541702-39541734)
[»] chr6 (6 HSPs)
chr6 (124-158)||(32820198-32820232)
chr6 (124-157)||(30756769-30756802)
chr6 (124-156)||(7575939-7575971)
chr6 (124-156)||(17545135-17545167)
chr6 (124-156)||(22734277-22734309)
chr6 (124-156)||(34327734-34327766)
[»] scaffold0017 (1 HSPs)
scaffold0017 (124-157)||(34586-34619)
[»] scaffold0683 (1 HSPs)
scaffold0683 (124-156)||(3473-3505)
[»] scaffold0137 (1 HSPs)
scaffold0137 (124-156)||(21675-21707)


Alignment Details
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 32722871 - 32722924
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttactc-caaaaacataaaaatt 176  Q
    ||||| ||||||||||||||||||||||||||||  | ||||||||||||||||    
T  32722871 ttttagcaaaacatgaatcaaatatgaatttttaagcacaaaaacataaaaatt 32722924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 2433719 - 2433773
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta--ctccaaaaacataaaaatt 176  Q
    |||||||||||||||||| |||||||||||||||    |||||||||||||||||    
T  2433719 ttttaacaaaacatgaattaaatatgaatttttaagtaccaaaaacataaaaatt 2433773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 4052737 - 4052771
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttac 158  Q
    |||||||||||||||||| ||||||||||||||||    
T  4052737 ttttaacaaaacatgaattaaatatgaatttttac 4052771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 7766145 - 7766195
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta-ctccaaaaacataaaa 173  Q
    ||||||||||||||||||  ||||||| |||||| ||||||||||||||||    
T  7766145 ttttaacaaaacatgaatttaatatgactttttagctccaaaaacataaaa 7766195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 10605706 - 10605673
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  10605706 ttttaacaaaacatgaattaaatatgaattttta 10605673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 14148610 - 14148643
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  14148610 ttttaacaaaacatgaattaaatatgaattttta 14148643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 14148724 - 14148691
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  14148724 ttttaacaaaacatgaattaaatatgaattttta 14148691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 38656411 - 38656378
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  38656411 ttttaacaaaacatgaattaaatatgaattttta 38656378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 38798552 - 38798585
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||| |||||||||||||||||||    
T  38798552 ttttaacaaaacataaatcaaatatgaattttta 38798585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 1047458 - 1047490
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  1047458 ttttaacaaaacatgaattaaatatgaattttt 1047490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 1770115 - 1770083
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  1770115 ttttaacaaaacatgaattaaatatgaattttt 1770083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 13013236 - 13013204
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  13013236 ttttaacaaaacatgaattaaatatgaattttt 13013204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 26615617 - 26615585
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  26615617 ttttaacaaaacatgaattaaatatgaattttt 26615585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 27141132 - 27141164
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  27141132 ttttaacaaaacatgaattaaatatgaattttt 27141164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 30465873 - 30465841
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  30465873 ttttaacaaaacatgaattaaatatgaattttt 30465841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 40668722 - 40668690
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  40668722 ttttaacaaaacatgaattaaatatgaattttt 40668690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 42668310 - 42668278
Alignment:
Q  125 tttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||||||||||||| |||||||||||||||    
T  42668310 tttaacaaaacatgaattaaatatgaattttta 42668278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 35471782 - 35471834
Alignment:
Q  126 ttaacaaaacatgaatcaaatatgaattttt--actccaaaaacataaaaatt 176  Q
    |||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  35471782 ttaacaaaacatgaatcaaatatgaattttttacctccaaaaatataaaaatt 35471834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 2394187 - 2394220
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  2394187 ttttaacaaaacatgaattaaatatgaattttta 2394220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 18803582 - 18803615
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  18803582 ttttaacaaaacatgaattaaatatgaattttta 18803615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 21804328 - 21804295
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  21804328 ttttaacaaaacatgaattaaatatgaattttta 21804295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 27247055 - 27247026
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatt 153  Q
    ||||||||||||||||||||||||||||||    
T  27247055 ttttaacaaaacatgaatcaaatatgaatt 27247026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 21707044 - 21707012
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  21707044 ttttaacaaaacatgaattaaatatgaattttt 21707012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 21973721 - 21973753
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  21973721 ttttaacaaaacatgaattaaatatgaattttt 21973753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 28555057 - 28555025
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  28555057 ttttaacaaaacatgaattaaatatgaattttt 28555025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 41320883 - 41320851
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  41320883 ttttaacaaaacatgaattaaatatgaattttt 41320851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 48154326 - 48154294
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  48154326 ttttaacaaaacatgaattaaatatgaattttt 48154294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 29096135 - 29096168
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||||||||||||||||||||||||||||||    
T  29096135 ttttaacaaaacatgaatcaaatatgaattttta 29096168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 11875882 - 11875936
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttactc--caaaaacataaaaatt 176  Q
    |||||||||||||||||| ||||||||||||||| ||  |||||| |||||||||    
T  11875882 ttttaacaaaacatgaattaaatatgaatttttaatcgtcaaaaatataaaaatt 11875936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 17229375 - 17229426
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttact-ccaaaaacataaaaa 174  Q
    |||||||||||||||||| ||||||||||||| | | |||||||||||||||    
T  17229375 ttttaacaaaacatgaattaaatatgaattttaagtgccaaaaacataaaaa 17229426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 5160944 - 5160911
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  5160944 ttttaacaaaacatgaattaaatatgaattttta 5160911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 11875962 - 11875929
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  11875962 ttttaacaaaacatgaattaaatatgaattttta 11875929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 12272786 - 12272733
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta-ctccaaaaacataaaaatt 176  Q
    ||||||||||||||||||  |||||| ||||||| | |||||||||||||||||    
T  12272786 ttttaacaaaacatgaatttaatatgtatttttagcaccaaaaacataaaaatt 12272733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 29654163 - 29654196
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  29654163 ttttaacaaaacatgaattaaatatgaattttta 29654196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 41460418 - 41460451
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  41460418 ttttaacaaaacatgaattaaatatgaattttta 41460451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 3971816 - 3971784
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  3971816 ttttaacaaaacatgaatgaaatatgaattttt 3971784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 6516615 - 6516583
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  6516615 ttttaacaaaacatgaattaaatatgaattttt 6516583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 13408148 - 13408180
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  13408148 ttttaacaaaacatgaattaaatatgaattttt 13408180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 25564302 - 25564334
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  25564302 ttttaacaaaacatgaataaaatatgaattttt 25564334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 26402838 - 26402806
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  26402838 ttttaacaaaacatgaattaaatatgaattttt 26402806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 32400779 - 32400747
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  32400779 ttttaacaaaacatgaattaaatatgaattttt 32400747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 36177908 - 36177876
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  36177908 ttttaacaaaacatgaattaaatatgaattttt 36177876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 37445913 - 37445945
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||| ||||||||||||||||||    
T  37445913 ttttaacaaaacataaatcaaatatgaattttt 37445945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 25593963 - 25593911
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta--ctccaaaaacataaaaa 174  Q
    |||||||||||||||||| |||||||||||||||  | |||||||||||||||    
T  25593963 ttttaacaaaacatgaattaaatatgaatttttaagcaccaaaaacataaaaa 25593911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 34100769 - 34100802
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||||||||||||||||||||||||||||||    
T  34100769 ttttaacaaaacatgaatcaaatatgaattttta 34100802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 41827557 - 41827506
Alignment:
Q  127 taacaaaacatgaatcaaatatgaattttt--actccaaaaacataaaaatt 176  Q
    ||||||||||||||| ||||||||||||||  | ||||||||||||||||||    
T  41827557 taacaaaacatgaattaaatatgaatttttaaaatccaaaaacataaaaatt 41827506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 47098269 - 47098359
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta-ctccaaaaacataaaaattga-aattcatattttgttaaaaagttataaatttttt 212  Q
    |||||||||||||| ||| ||| ||||||||||| |  |||||||||||||||||| | || |||||||||| |||| || ||| ||||||    
T  47098269 ttttaacaaaacattaataaaacatgaatttttagcgacaaaaacataaaaattgatatttaatattttgttgaaaaattctaattttttt 47098359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 8168400 - 8168433
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  8168400 ttttaacaaaacatgaattaaatatgaattttta 8168433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 13030611 - 13030644
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  13030611 ttttaacaaaacatgaattaaatatgaattttta 13030644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 13482991 - 13482958
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  13482991 ttttaacaaaacatgaattaaatatgaattttta 13482958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 16946363 - 16946396
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||| ||||||||||||||||||||||||||    
T  16946363 ttttaacgaaacatgaatcaaatatgaattttta 16946396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 29146031 - 29146064
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  29146031 ttttaacaaaacatgaattaaatatgaattttta 29146064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 29963287 - 29963320
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  29963287 ttttaacaaaacatgaattaaatatgaattttta 29963320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 39407706 - 39407673
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  39407706 ttttaacaaaacatgaattaaatatgaattttta 39407673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 43440210 - 43440177
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  43440210 ttttaacaaaacatgaattaaatatgaattttta 43440177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 49333708 - 49333675
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  49333708 ttttaacaaaacatgaattaaatatgaattttta 49333675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 55881734 - 55881701
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||||||||||||||||||||| ||||||||    
T  55881734 ttttaacaaaacatgaatcaaatataaattttta 55881701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 56302554 - 56302587
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  56302554 ttttaacaaaacatgaattaaatatgaattttta 56302587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 16078434 - 16078466
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  16078434 ttttaacaaaacatgaattaaatatgaattttt 16078466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 34374212 - 34374244
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  34374212 ttttaacaaaacatgaattaaatatgaattttt 34374244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 39652491 - 39652459
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  39652491 ttttaacaaaacatgaattaaatatgaattttt 39652459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 39176959 - 39176926
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||||||||||||||||||||||||||||||    
T  39176959 ttttaacaaaacatgaatcaaatatgaattttta 39176926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 8015990 - 8016049
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttact--ccaaaaacataaaaattgaaat 181  Q
    |||||||||||||||||| |||||| |||||||| |  ||||||||||||||||| ||||    
T  8015990 ttttaacaaaacatgaattaaatatcaatttttaatggccaaaaacataaaaattcaaat 8016049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 35317367 - 35317421
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta--ctccaaaaacataaaaatt 176  Q
    |||||||||||||| ||| |||||||||||||||  ||||||||| |||||||||    
T  35317367 ttttaacaaaacataaattaaatatgaatttttaacctccaaaaatataaaaatt 35317421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 37671677 - 37671623
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta--ctccaaaaacataaaaatt 176  Q
    ||||||||||| || ||| |||||||||||||||  |||||||||||||||||||    
T  37671677 ttttaacaaaatataaattaaatatgaatttttaagctccaaaaacataaaaatt 37671623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 9693344 - 9693290
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt-act-ccaaaaacataaaaatt 176  Q
    |||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||    
T  9693344 ttttaacaaaacataaattaaatatgaatttttaactgccaaaaacataaaaatt 9693290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 26370082 - 26370028
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaat-ttttact-ccaaaaacataaaaatt 176  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||    
T  26370082 ttttaacaaaacatgaattaaatatgaattttttactgccaaaaatataaaaatt 26370028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 8150899 - 8150932
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  8150899 ttttaacaaaacatgaattaaatatgaattttta 8150932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 25588053 - 25588020
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  25588053 ttttaacaaaacatgaattaaatatgaattttta 25588020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 31311177 - 31311144
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||| ||||||||||||||||||||||||||||    
T  31311177 ttttaccaaaacatgaatcaaatatgaattttta 31311144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 37671597 - 37671630
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  37671597 ttttaacaaaacatgaattaaatatgaattttta 37671630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 39176879 - 39176912
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  39176879 ttttaacaaaacatgaattaaatatgaattttta 39176912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 41993017 - 41992984
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  41993017 ttttaacaaaacatgaattaaatatgaattttta 41992984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 3918366 - 3918398
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  3918366 ttttaacaaaacatgaattaaatatgaattttt 3918398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 33254672 - 33254704
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  33254672 ttttaacaaaacatgaattaaatatgaattttt 33254704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 33463478 - 33463510
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  33463478 ttttaacaaaacatgaattaaatatgaattttt 33463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 52169403 - 52169371
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  52169403 ttttaacaaaacatgaattaaatatgaattttt 52169371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 52252806 - 52252838
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  52252806 ttttaacaaaacatgaattaaatatgaattttt 52252838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 55379038 - 55379006
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  55379038 ttttaacaaaacatgaattaaatatgaattttt 55379006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 27494893 - 27494926
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||||||||||||||||||||||||||||||    
T  27494893 ttttaacaaaacatgaatcaaatatgaattttta 27494926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 91578 - 91545
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  91578 ttttaacaaaacatgaattaaatatgaattttta 91545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 1607771 - 1607738
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  1607771 ttttaacaaaacatgaattaaatatgaattttta 1607738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 15600527 - 15600494
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  15600527 ttttaacaaaacatgaattaaatatgaattttta 15600494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 32924529 - 32924496
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    ||||||||||||||||||| ||||||||||||||    
T  32924529 ttttaacaaaacatgaatctaatatgaattttta 32924496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 34941419 - 34941386
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  34941419 ttttaacaaaacatgaattaaatatgaattttta 34941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 35796132 - 35796165
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  35796132 ttttaacaaaacatgaattaaatatgaattttta 35796165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 4618437 - 4618405
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  4618437 ttttaacaaaacatgaattaaatatgaattttt 4618405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 7236934 - 7236902
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  7236934 ttttaacaaaacatgaattaaatatgaattttt 7236902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 8760055 - 8760023
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  8760055 ttttaacaaaacatgaattaaatatgaattttt 8760023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 12300545 - 12300577
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  12300545 ttttaacaaaacatgaattaaatatgaattttt 12300577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 14083218 - 14083250
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  14083218 ttttaacaaaacatgaattaaatatgaattttt 14083250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 17632962 - 17632930
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  17632962 ttttaacaaaacatgaattaaatatgaattttt 17632930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 20754608 - 20754576
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  20754608 ttttaacaaaacatgaattaaatatgaattttt 20754576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 26821082 - 26821050
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  26821082 ttttaacaaaacatgaattaaatatgaattttt 26821050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 32589887 - 32589919
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  32589887 ttttaacaaaacatgaattaaatatgaattttt 32589919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 41885264 - 41885296
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  41885264 ttttaacaaaacatgaattaaatatgaattttt 41885296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 46947700 - 46947732
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  46947700 ttttaacaaaacatgaattaaatatgaattttt 46947732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 52510696 - 52510664
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  52510696 ttttaacaaaacatgaattaaatatgaattttt 52510664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 29387195 - 29387143
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttactccaaaaacataaaaatt 176  Q
    |||||||||||||||||| ||||||||||||||||  | |||| |||||||||    
T  29387195 ttttaacaaaacatgaattaaatatgaatttttaccgccaaaatataaaaatt 29387143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 8811264 - 8811318
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta--ctccaaaaacataaaaatt 176  Q
    |||||||||||||| ||| |||||||||||||||  ||||||||| |||||||||    
T  8811264 ttttaacaaaacataaattaaatatgaatttttaacctccaaaaatataaaaatt 8811318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 6649576 - 6649626
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttactccaaaaacataaaaa 174  Q
    |||||||||||||||||| |||||||||||||||    |||||||||||||    
T  6649576 ttttaacaaaacatgaattaaatatgaatttttaagagaaaaacataaaaa 6649626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 40073564 - 40073530
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttac 158  Q
    |||||||||||||||||| ||||||||||||||||    
T  40073564 ttttaacaaaacatgaattaaatatgaatttttac 40073530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 3623494 - 3623527
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  3623494 ttttaacaaaacatgaatgaaatatgaattttta 3623527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 8811344 - 8811311
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  8811344 ttttaacaaaacatgaattaaatatgaattttta 8811311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 18381501 - 18381468
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  18381501 ttttaacaaaacatgaattaaatatgaattttta 18381468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 26062374 - 26062341
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  26062374 ttttaacaaaacatgaattaaatatgaattttta 26062341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 26068113 - 26068080
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  26068113 ttttaacaaaacatgaattaaatatgaattttta 26068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 34129873 - 34129840
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  34129873 ttttaacaaaacatgaattaaatatgaattttta 34129840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 39751458 - 39751491
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  39751458 ttttaacaaaacatgaattaaatatgaattttta 39751491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 40141303 - 40141336
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  40141303 ttttaacaaaacatgaattaaatatgaattttta 40141336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 1379031 - 1378999
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  1379031 ttttaacaaaacatgaattaaatatgaattttt 1378999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 39541734 - 39541702
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  39541734 ttttaacaaaacatgaattaaatatgaattttt 39541702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 32820232 - 32820198
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaatttttac 158  Q
    |||||||||||||||||| ||||||||||||||||    
T  32820232 ttttaacaaaacatgaattaaatatgaatttttac 32820198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 30756769 - 30756802
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  30756769 ttttaacaaaacatgaattaaatatgaattttta 30756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 7575971 - 7575939
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  7575971 ttttaacaaaacatgaattaaatatgaattttt 7575939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 17545167 - 17545135
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  17545167 ttttaacaaaacatgaattaaatatgaattttt 17545135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 22734277 - 22734309
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  22734277 ttttaacaaaacatgaattaaatatgaattttt 22734309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 34327766 - 34327734
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  34327766 ttttaacaaaacatgaattaaatatgaattttt 34327734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 34619 - 34586
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttta 157  Q
    |||||||||||||||||| |||||||||||||||    
T  34619 ttttaacaaaacatgaattaaatatgaattttta 34586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 3505 - 3473
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  3505 ttttaacaaaacatgaattaaatatgaattttt 3473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 21675 - 21707
Alignment:
Q  124 ttttaacaaaacatgaatcaaatatgaattttt 156  Q
    |||||||||||||||||| ||||||||||||||    
T  21675 ttttaacaaaacatgaattaaatatgaattttt 21707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University