View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10723_high_3 (Length: 227)
Name: NF10723_high_3
Description: NF10723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10723_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 40109586 - 40109803
Alignment:
| Q |
1 |
ataatgggagaagagtgtgaaaaatcataaatatactaatagtgtatagtattgatgttgtcgagattaggtgcaagtattgttgagagaaataaaagaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40109586 |
ataatgggagaagaatgtgaaaaatcataaatatactaatagtgtatagtattgatgttgtcgagataaggtgcaagtattgttgagagaaataaaagaa |
40109685 |
T |
|
| Q |
101 |
tcacgtcaatcagtgacggaccgactagacctatgttagccgaatcaccac------tttttatatttaagcacacatgcactcactagtttaaaaaggt |
194 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40109686 |
tcacgtcaatcagtgacggaccgactggacctatgttagccgaatcaccactttttttttttatatttaagcaca----cactcactagtttaaaaaggt |
40109781 |
T |
|
| Q |
195 |
aaacgag-aaaaaatcatttat |
215 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
40109782 |
aaacgagaaaaaaatcatttat |
40109803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 27900017 - 27899973
Alignment:
| Q |
176 |
ctcactagtttaaaaaggtaaacgagaaaaaatcatttatattat |
220 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
27900017 |
ctcattagttaaaaaaagtaaaagagaaaaaatcatttatattat |
27899973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University