View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10724_1 (Length: 1059)
Name: NF10724_1
Description: NF10724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10724_1 |
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Alignment Details
Target: chr4 (Bit Score: 861; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 861; E-Value: 0
Query Start/End: Original strand, 22 - 926
Target Start/End: Complemental strand, 56324915 - 56324010
Alignment:
| Q |
22 |
acatttaacattgaaactccggttacatttttaaaatttagtatgttttgctgccattcaggttgatactgctggttggttgcagaggacaaaactggag |
121 |
Q |
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| T |
56324915 |
acatttaacattgaaactccggttacatttttaaaatttagaatgttttgctgccattcaggttgatactgctggttggttgcagaggacaaaactggag |
56324816 |
T |
|
| Q |
122 |
aaaggagcatcatccttgagcattatgcaatcaaggaagagtctactccgggctcatataattgctttggtactagatgccggcgaggtatgctgcttat |
221 |
Q |
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| T |
56324815 |
aaaggagcatcatccttgagcattatgcaatcaaggaagagtctactccgggctcatataattgctttggtactagatgccggcgaggtatgctgcttat |
56324716 |
T |
|
| Q |
222 |
attgcatgtttcagacaatagtgccaaaatgtgatataatcaaccaatgttttaacatgcgaagtttatattcataatgtttgttgttctaatttggttt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
56324715 |
attgcatgtttcagacaatagtgccaaaatgtgatataatcaaccaatgttttaacatgcgaagtttatattcataatgtttattgttctaatttggttt |
56324616 |
T |
|
| Q |
322 |
cacacatttctaataattaaactcacatttgagcccaatcagaatgtaattgttctagtaattcatttatcttgtggaaattttgaatctactaagattt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
56324615 |
cacacatttctaataattaaactcacatttgagcccaatcagaatgtaattgttctagtaattcatttatcttgtagaaattttgaatctactaagattt |
56324516 |
T |
|
| Q |
422 |
ttggattttgctgattgttttcccaaatactttttcattgaagactcgatagttctagggtggtttgttctctctgatgaaagaaacatgcgtcctgctt |
521 |
Q |
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| T |
56324515 |
ttggattttgctgattattttcccaaatactttttcattgaagactcgatagttctagggtggtttgttctctctgatgaaagaaacatgcgtcctgctt |
56324416 |
T |
|
| Q |
522 |
cagtcccataatttttggtttacactttaccccttaaatgaagttatgttgtccattatgatgcatttgtgaatgtgaagtatgtgttcatgtttgtaac |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56324415 |
cagtcccataatttttggtttacactttaccccttaaatgaagttatgttgtccattatgatgcatttgtgaatgtgaagtatgtgttcatgtttgtaac |
56324316 |
T |
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| Q |
622 |
accctttattaaaaacgtgatcaatcagaaaggtctctcctctctattttcaaggtgttaattaaatatttaatcttgttataagg-nnnnnnnattgga |
720 |
Q |
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| T |
56324315 |
accctttattaaaaacgtgatcaatcagaaaggtctctcctctctattttcaaggtgttaattaaatatttaatcttgttataaggttttttttattgga |
56324216 |
T |
|
| Q |
721 |
aagtctatgttgaccagatagtaagtgctaaacgaagtatgaaacatgctgaagtagttatagccagacgagccgtggaagagggacgtggtcttgttgt |
820 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56324215 |
aagtctatgttgaccagatagtaagtgctaaacgaagtatgaaacatgctgaagtagttatagccagacgagccgtggaagagggacgtggtcttgttgt |
56324116 |
T |
|
| Q |
821 |
gattgtgaacaagatggatcttctaaggggaaaaaacaaatcagcatcctatgagcaggttctggaggctgttcaacaagaaatccagacaattatacca |
920 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56324115 |
gattgtgaacaagatggatcttctaaggggaaaaaacaaatcagcatcctatgagcaggttctggaggctgttcaacaagaaatccagacaattatacca |
56324016 |
T |
|
| Q |
921 |
caggtt |
926 |
Q |
| |
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|||||| |
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|
| T |
56324015 |
caggtt |
56324010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 941 - 1031
Target Start/End: Original strand, 1552207 - 1552297
Alignment:
| Q |
941 |
atgagtgttgggaatttattttcaaatttataatcctcgaaggcgatgacatcaacaactgtcgctatttgaagtctttatcccttgtctc |
1031 |
Q |
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||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
1552207 |
atgagtgttgggaatttattttcaaatttatcatcatctaaggcgatgacatcaacaaacttcgctatttgaagtctttatccctcgtctc |
1552297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 938 - 1031
Target Start/End: Original strand, 1547380 - 1547473
Alignment:
| Q |
938 |
ctgatgagtgttgggaatttattttcaaatttataatcctcgaaggcgatgacatcaacaactgtcgctatttgaagtctttatcccttgtctc |
1031 |
Q |
| |
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|||| ||||||||||||| ||| |||||||| || ||| |||| || || |||||||||| || |||| |||||||| |||||||||||||| |
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| T |
1547380 |
ctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggtgacaacatcaacaatcgtggctacttgaagtcattatcccttgtctc |
1547473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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