View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10724_2 (Length: 988)
Name: NF10724_2
Description: NF10724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10724_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 903; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 29 - 967
Target Start/End: Original strand, 7755143 - 7756078
Alignment:
| Q |
29 |
cctattccgccagctccgtaaattcccaacatgcaaatacgttcactagagttgatatcaataatagatttcacctgtttgaaacgagtattgaggccga |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7755143 |
cctattccgccagctccgtaaattcccaacatgcaaatacgttcactagagttgatatcaataatagatttcacctgtttgaaacgagtattgaggccga |
7755242 |
T |
|
| Q |
129 |
ctaggtgtttgatttgtaaaggcacggtcggtagtttagtagagatatctctgacaatcttttcaataaagtcagattcatagctgcatagaatgacaag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
7755243 |
ctaggtgtttgatttgtaaaggcacggtcggtagtttagtagagatatctctgacaatcttttcaataaactcagattcatagctgcatagaatgacaag |
7755342 |
T |
|
| Q |
229 |
atgaagaatgagagatatcaaaggagcgcgaggagaaaatgattcaactaaaaaagagagaatctgagagagatgatagtttacaagtcattttccttat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7755343 |
atgaagaatgagagatatcaaaggagcgcgaggagaaaatgattcaactaaaaaagagagaatctgagagagttgatagtttacaagtcattttccttat |
7755442 |
T |
|
| Q |
329 |
aattagttaaatgtttggggacttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7755443 |
aattagttaaatgtttggggacttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctc |
7755542 |
T |
|
| Q |
429 |
cgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatcttataaaatataacg |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
7755543 |
cgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatc-tat-aaatataacg |
7755640 |
T |
|
| Q |
529 |
aaaaccgattttccattattttcataacagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagcatagtctttacacagcacaacgattg |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7755641 |
aaaaccgattttccattattttcataacagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagcatattctttacacagcacaacgattg |
7755740 |
T |
|
| Q |
629 |
agattctagaagcttcgattgcttgtaggagtgaaggtccgatttcatggccgatcttgaggttttggtcgtctctgaaaacgttgattccttgacggag |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7755741 |
agattctagaagcttcgattgcttgtaggagtgaaggtccgatttcatggccgatcttgaggttttggtcgtctctgaaaacgttgattccttgacggag |
7755840 |
T |
|
| Q |
729 |
aagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgtagtgatttgccattgat |
828 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7755841 |
aagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgtagtgatttgccattgat |
7755940 |
T |
|
| Q |
829 |
gaagattatggtgaagttttaattttgagttttgaggtttatgtgtaaaattgtagaatggtttaagttttaaatgaagtgtggagcttcaaaagtcaga |
928 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7755941 |
gaagattatggtgaag-tttaattttgagttttgaggtttatgtgtaaaattgtagaatggtttaagttttaaatgaagtgtggagcttcaaaagtcaga |
7756039 |
T |
|
| Q |
929 |
agaatgcgggattacaaagaaacggtctacatgatgatg |
967 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7756040 |
agaatgcgggattacaaagaaacggtctacatgatgatg |
7756078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 327 - 830
Target Start/End: Original strand, 7762894 - 7763398
Alignment:
| Q |
327 |
ataattagttaaatgtttggggacttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttc |
426 |
Q |
| |
|
||||||| |||| ||||| | ||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
7762894 |
ataattaattaatggtttgagaacttacatattatctttgcaatgtaatccactgagagcacaaacacgattcaaagccaacctccatgctttcaccttc |
7762993 |
T |
|
| Q |
427 |
tccgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctga-tacctaacatcgctaggttccatcttataaaatata |
525 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| | || ||| |||||||||||| ||||| ||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
7762994 |
tccgattcctttccaaatctattttcatgtttcatcattgcaatttcataactattcctctgactacctaacatctgaaggttctatcttataaaaaata |
7763093 |
T |
|
| Q |
526 |
acgaaaaccgattttccattattttcataacagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagcatagtctttacacagcacaacga |
625 |
Q |
| |
|
|| || || ||||||| ||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||||| || |||| |||||||| |
|
|
| T |
7763094 |
acaaatactgattttctatttttgtcataacagtcaacgatcttgactagttcatcaaggcaccaagtggaagaagcataatcacggcacaacacaacga |
7763193 |
T |
|
| Q |
626 |
ttgagattctagaagcttcgattgcttgtaggagtgaaggtccgatttcatggccgatcttgaggttttggtcgtctctgaaaacgttgattccttgacg |
725 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||| ||||||||||| ||||| |||| |||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
7763194 |
ttgagattctagaagcttcaattgcttttagaagtgaagttccgatttcatcaccgatgttgatgttttgatcgtctctgaagacgttgattccatgacg |
7763293 |
T |
|
| Q |
726 |
gagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgtagtgatttgccatt |
825 |
Q |
| |
|
|||||| || | ||||||||||| ||||| |||||||| ||||||||||||||||||||||| | ||||| ||||||| || | |||||| |||||| |
|
|
| T |
7763294 |
gagaagagagtgatagagatgatccgtgaaggagtagcgagttccgcctctgaaactcagaaatatgtcgtgtgtgaaataatcattgtgattcgccatt |
7763393 |
T |
|
| Q |
826 |
gatga |
830 |
Q |
| |
|
||||| |
|
|
| T |
7763394 |
gatga |
7763398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 349 - 811
Target Start/End: Original strand, 7839585 - 7840050
Alignment:
| Q |
349 |
acttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctct |
448 |
Q |
| |
|
||||||| |||||||||| | | || |||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
7839585 |
acttacatatcgtccttgtagtatagtccactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctct |
7839684 |
T |
|
| Q |
449 |
tttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatcttataaaatataacgaaaaccgattttccattatt |
548 |
Q |
| |
|
||||||||| | || ||| |||||| || ||| |||||| |||||||| || ||||| ||||||||||||||| ||||| | ||| || || | |
|
|
| T |
7839685 |
tttcatgttgaatcattgcaatttcatagctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcat |
7839784 |
T |
|
| Q |
549 |
ttcata---acagtcaacgatcttaacaagttcatcaaggcaccaagttgaagaagcatagtctttacacagcacaacgattgagattctagaagcttcg |
645 |
Q |
| |
|
|| || |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7839785 |
ctcgtagtaacagtcaacgatcttaacaagttcgtcaaggcaccaagtggaagaagcgtagtctttacacagaacaacgattgaaattctagaagcttcg |
7839884 |
T |
|
| Q |
646 |
attgcttgtaggagtgaaggtccgatttcatggccgatcttgaggttttggtcgtctctgaaaacgttgattccttgacggagaagtgaacggtagagat |
745 |
Q |
| |
|
||||||||||| |||||| ||| |||||| | |||||| || |||||| | | ||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7839885 |
attgcttgtagaagtgaaagtctgatttcgtcgccgatgttaaggtttggattgtctctgaagacgttgattccgtgacggagaagtgaacggtagagat |
7839984 |
T |
|
| Q |
746 |
gatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgt |
811 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||| || ||||| ||||||||||| ||||||| |
|
|
| T |
7839985 |
gatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtgagtgaagtcttcgt |
7840050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 7838662 - 7838871
Alignment:
| Q |
29 |
cctattccgccagctccgtaaattcccaacatgcaaatacgttcactagagttgatatcaataatagatttcacctgtttgaaacgagtattgaggccga |
128 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| | ||| || | |||| ||||| |||||||||||||| |||||||| || ||| || | |
|
|
| T |
7838662 |
cctattccaccagctccataaattcccaacatgcaaacaacatca---gaatcaatattaataagagatttcacctgttcgaaacgagaatcgagtccaa |
7838758 |
T |
|
| Q |
129 |
ctaggtgtttgatttgtaaaggcacggtcggtagtttagtagagatatctctgacaatcttttcaataaagtcagattcatagctgcatagaatgacaag |
228 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
7838759 |
ctaggtgtttaatttgtaaaggcgtgggaggtagtttagctgagatgtctctcacaatcttctcaataaactcagattcatagctgcatagaaatacaat |
7838858 |
T |
|
| Q |
229 |
atgaagaatgaga |
241 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
7838859 |
atgatgaatgaga |
7838871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 7762251 - 7762436
Alignment:
| Q |
29 |
cctattccgccagctccgtaaattcccaacatgcaaatacgttcactagagttgatatcaataatagatttcacctgtttgaaacgagtattgaggccga |
128 |
Q |
| |
|
|||||||| ||| |||| || ||| |||||||||||| | ||| ||| ||| ||||||||| ||| |||||||||| |||||||| || ||| |||| |
|
|
| T |
7762251 |
cctattccaccacctccatagatttccaacatgcaaacagcatcatcagaattggtatcaataagagacttcacctgttcgaaacgagaatcgagtccga |
7762350 |
T |
|
| Q |
129 |
ctaggtgtttgatttgtaaaggcacggtcggtagtttagtagagatatctctgacaatcttttcaataaagtcagattcatagctg |
214 |
Q |
| |
|
|||||||||| ||||||||||| | || |||||||||| ||||| ||| |||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
7762351 |
ctaggtgtttaatttgtaaaggtatgggaggtagtttagctgagatctctttgacaatcttctcaataaactcatattcatagctg |
7762436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 889 - 967
Target Start/End: Original strand, 7840117 - 7840195
Alignment:
| Q |
889 |
gtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatgatg |
967 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
7840117 |
gtttgagttttaaatcaagtgtggagcttcaaaagtcagaagaaagcgggatcacaatgaaccggtctacatgatgatg |
7840195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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