View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10724_3 (Length: 621)
Name: NF10724_3
Description: NF10724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10724_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 17 - 621
Target Start/End: Complemental strand, 9974255 - 9973651
Alignment:
| Q |
17 |
gacatcatcatgaattaggagttaaaaaagacaatagataaacgggaccgactcattgtgctccaaaaatttcgcagttgattatgacacaatacatgtc |
116 |
Q |
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| T |
9974255 |
gacatgatcatgaattaggagttaaaaaggacaatagataaacgggaccgactcattgtgctccaaaaatttcgcagttgattatgacacaatacatgtc |
9974156 |
T |
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| Q |
117 |
acatagccaatagtgaaacctgcaccttcaataacaaaccacatcacgatgagtttttaaagccatttgatgaatggtgacaacacagtgtgtcccccct |
216 |
Q |
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| T |
9974155 |
acatagccaatagtgaaacctgcaccttcaataacaaaccacatcacgatgagtttttaaagccatttgatgaatggtgacaacacagtgtgtcccccct |
9974056 |
T |
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| Q |
217 |
cttcaaatctaccctctcgtgagtttatgagcttgctgttactaacactttcaataatggtgtcttctatgttccatttgcttcatgtttgataatgaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9974055 |
cttcaaatctaccctctcgtgagtttatgagcttgctgttaccaacactttcaataatggtgtcttctatgtttcatttgcttcatgtttgataatgaca |
9973956 |
T |
|
| Q |
317 |
aacaaatctaacttgtcctcaaatcaattccaaataattttttgctgacatggatgtttctatttacataacctattgaacagtgaaatgtttgtttttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9973955 |
aacaaatctaacttgtcctcaaatcaattccaaataattttttgctgacatggatgtttctatttacataacctattgaacagtgaaatgtttgtttttc |
9973856 |
T |
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| Q |
417 |
atgtgttagaaatagcatccaataatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagcattataagaattcaagataagataat |
516 |
Q |
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| T |
9973855 |
atgtgttagaaatagcatccaataatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagtattataagaattcaagataagataat |
9973756 |
T |
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| Q |
517 |
tgagtagtgcacaccaagaagtatggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatc |
616 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9973755 |
tgagtagagcacaccaagaagtatggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatc |
9973656 |
T |
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| Q |
617 |
tcagt |
621 |
Q |
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| T |
9973655 |
tcagt |
9973651 |
T |
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