View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10724_4 (Length: 570)
Name: NF10724_4
Description: NF10724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10724_4 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 136 - 542
Target Start/End: Original strand, 38877102 - 38877508
Alignment:
| Q |
136 |
cctgtgctatctttctttctagatgaaacctgtatctgatttttaattttgattttaagttggcagcgaaattccgtttctggtagaaaaactgtggttg |
235 |
Q |
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| T |
38877102 |
cctgtgctatctttctttctagatgaaacctgtatctgatttttaattttgattttaagttggcagcaaaattccgtttctggtagaaaaactgtggttg |
38877201 |
T |
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| Q |
236 |
atgttggcaaaaactagtcccttaggagtttctttcagtatgtatatagatgataattattcagatcataagtgaaattgatcttcaatgcctgtaggcc |
335 |
Q |
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| T |
38877202 |
atgttggcaaaaactagtcccttaggagtttctttcagtatgtatatagatgataattattcagatcataagtgaaattgatcttcaatgcctgtaggcc |
38877301 |
T |
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| Q |
336 |
gtacaacttggaagccgtgagcgtctccttgctttttgtgaggctgttcagagaagctctcccgtggggtcatacaccaaaccaattgcgggtaccactc |
435 |
Q |
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| T |
38877302 |
gtacaacttggaagccgtgagcgtctccttgctttttgtgaggctgttcagagaagctctcctgtggggtcatacaccaaaccaattgcgggtaccactc |
38877401 |
T |
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| Q |
436 |
ctggatatgcatcagaggtctgctctgattaaccttcacagcgcctaaacaaattgattatgttttggtccttaaatgatgttcaatattactttgatat |
535 |
Q |
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| T |
38877402 |
ctggatatgcatcagaggtctgctctgattaaccttcacagcgcctaaacaaattgattatgttttggtccttaaatgatgttcaatattactttgatat |
38877501 |
T |
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| Q |
536 |
ccaaagt |
542 |
Q |
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| T |
38877502 |
ccaaagt |
38877508 |
T |
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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 1552297 - 1552207
Alignment:
| Q |
29 |
gagacaagggataaagacttcaaatagcgacagttgttgatgtcatcgccttcgaggattataaatttgaaaataaattcccaacactcat |
119 |
Q |
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| T |
1552297 |
gagacgagggataaagacttcaaatagcgaagtttgttgatgtcatcgccttagatgatgataaatttgaaaataaattcccaacactcat |
1552207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 1547473 - 1547380
Alignment:
| Q |
29 |
gagacaagggataaagacttcaaatagcgacagttgttgatgtcatcgccttcgaggattataaatttgaaaataaattcccaacactcatcag |
122 |
Q |
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| T |
1547473 |
gagacaagggataatgacttcaagtagccacgattgttgatgttgtcaccgtcgatgatgatgaatttgaagatagattcccaacactcgtcag |
1547380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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