View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10724_5 (Length: 562)
Name: NF10724_5
Description: NF10724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10724_5 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 40285313 - 40284760
Alignment:
| Q |
1 |
atgttaatgttctttatgctagagctatggtcttattgaattgattatgtggcaggtggaaatagtgatgggtttagaggaagagtttaaccttaatatt |
100 |
Q |
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| T |
40285313 |
atgttaatgttctttatgctagagctatggtcttattgaattgattatgtggcaggtggaaatagtgatgggtttagaggaagagtttaaccttaatatt |
40285214 |
T |
|
| Q |
101 |
gaggatgataatgctgaagacatcacaaccattcaacaagcagctgatttgatagagaaattgattcaaaagaaagattaagcttaagagttgaacctaa |
200 |
Q |
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| T |
40285213 |
gaggatgataatgctgaagacatcacaacaattcaacaagcagctgatttgatagagaaattgattcaaaagaaagattaagcttaagagttgaacctaa |
40285114 |
T |
|
| Q |
201 |
tggaagctctacggaaaatacttctagaggtgaagagcaactgagttaagataagataatcatcagcaaatttatttttggccattttttgtgcttatgc |
300 |
Q |
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| T |
40285113 |
tggaagctctacggaaaatacttctagaggtgaagagcaactgagttaagataagataatcatcagcaaatttatttttggacattttttgtgcttatgc |
40285014 |
T |
|
| Q |
301 |
ctatattctttaggaaggagtttgaatattttttaaattgtaacttggttaacttgctatttgttgcaagcatggtgacagaaaatgttttatatt---- |
396 |
Q |
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| T |
40285013 |
ctatattctttaggaaggagattgaatattttttaaattgtaacttggttaacttgctatttgttgcaagcatggtgacagaaaatgttttatatttatt |
40284914 |
T |
|
| Q |
397 |
----------------taagataagcatgtcatctgcgtttttaggtcaagatcacaggttctgctcgtctattgctccatccttgtacctaatatggtt |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| | |||||| |
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| T |
40284913 |
ggactctaagataagataagataagcatgtcatctgcgtttttaggtcaagatcataggtaatgttcgtctattgctccatccttgtaccttacatggtt |
40284814 |
T |
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| Q |
481 |
tttagaaagtttgatcacaccaaagagaatacaaagccaggtaaagggtgaggt |
534 |
Q |
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| T |
40284813 |
tttagaaagtttgatcacaccaaagagaatacaaagccaggtaaagggtgaggt |
40284760 |
T |
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