View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10724_6 (Length: 434)
Name: NF10724_6
Description: NF10724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10724_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 41652319 - 41652729
Alignment:
| Q |
14 |
gaacttatgccaccacaagatggtattggaaatagagttccgaacggaattgaggag--gagcacagattcagtagttaagcaggtagatatgacttgcc |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| || | || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41652319 |
gaacttatgccgccacaagatggtattggaaatagagttccgaacggaattaagttgctgaacacagattcattagttaagcaggtagatatgacttgcc |
41652418 |
T |
|
| Q |
112 |
taagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcgcttatgttataacatgtggaaagggttttcgctgcaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41652419 |
taagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcgcttatgttataacatgtggaaagggttttcgctgcaag |
41652518 |
T |
|
| Q |
212 |
tcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaaccatcctgaatttacttattgtcaattttatcgttcatatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41652519 |
tcatccagattctgtggagcttgagaaagcaaagccgatgctgaaagtacagtcactaaccatcctgaatttacttattgtcaattttatcgttcatatt |
41652618 |
T |
|
| Q |
312 |
ttctgattattgattgtaatgttgtataggagcatgagcaggctcttgtcgacataatttcaaggattgcagatgcatctgatggtgaaaatggtaacaa |
411 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41652619 |
ttctgattattgattgtaaagttgtataggagcatgagcaggctcttgtcgacataatttcaaggattgcagatgcatctgatggtgaaagtggtaacaa |
41652718 |
T |
|
| Q |
412 |
ttagatgtcta |
422 |
Q |
| |
|
||||||||||| |
|
|
| T |
41652719 |
ttagatgtcta |
41652729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 22879486 - 22879910
Alignment:
| Q |
14 |
gaacttatgccaccacaagatggtattggaaatagagttccgaacggaattgaggagg--agcacagattcagtagttaagcaggtagatatgacttgcc |
111 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||||||||||||| ||| ||||||| | | |||||||||| |||||||| ||||||||||||||| || |
|
|
| T |
22879486 |
gaactcatgccgccacaaaatggtattggaaatagagttccggacgaaattgagttgctaaacacagattcattagttaaggaggtagatatgacttacc |
22879585 |
T |
|
| Q |
112 |
taagcaatcttattattgagaat-gggagaaaagataaggaagttctttagtttttaatggcgcttatgttata--acatgtggaaagggttttcgctgc |
208 |
Q |
| |
|
|||| || |||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
22879586 |
taagaaaccttatt---gagaaacgggtgaaaagataaggaagttctttagtttttaatgccgcttatgttatataacaggtggaaagggtttttgctgc |
22879682 |
T |
|
| Q |
209 |
aagtcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaaccatcctgaatttacttattgtcaatt----------- |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| | |
|
|
| T |
22879683 |
aagtcatccagattctgtggagcttgagaaagcaaagcaaatgctgaaagtacagtcgctaaccatcatgaaattacttattgtcaactttaatgccaca |
22879782 |
T |
|
| Q |
298 |
---ttatcgttcatattttctgattattgattgtaatgttgtataggagcatgagcaggctcttgtcgacataatttcaaggattgcagatgcatctgat |
394 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||| |
|
|
| T |
22879783 |
tggttattgttcatattttctgattgttgattgtaatgttgtataggagcatgagcaggctctcgtcgacgcaatttcgaggattgcagatgcatcagat |
22879882 |
T |
|
| Q |
395 |
ggtgaaaatggtaacaattagatgtcta |
422 |
Q |
| |
|
||||||| |||||| ||||||||||||| |
|
|
| T |
22879883 |
ggtgaaagtggtaataattagatgtcta |
22879910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University