View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_high_2 (Length: 479)
Name: NF10725_high_2
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 40560508 - 40560056
Alignment:
| Q |
17 |
tcttttacttctgcatactctcatttccaactgacatctcttcnnnnnnn-gacgaaaattttccaaccgacatccggtgacctttattgttctttttcc |
115 |
Q |
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| T |
40560508 |
tcttttacttctgcatactctcatttccaactgacatctcttcttttttttgacgaaaattttccaaccgacatctggtgacctttattgttctttttgc |
40560409 |
T |
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| Q |
116 |
ctacagtaaaacaaaccatgcaaaaccatataattaaaattcgagtaatatataaaaagatataatatctgtagaagatgacctaatagcaatcttattc |
215 |
Q |
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| T |
40560408 |
ctacagtaaaacaaaccatgcaaaaccatataattaaaattcgagtaatatataaaaagatataatatctgtagaagatggcctaatagcaatcttattc |
40560309 |
T |
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| Q |
216 |
ttacaaaaacaccaaaagatgaatagataactttatattaaagggaatataaacttacattttttgttttcttcacatgtttggtgcatgttcataattg |
315 |
Q |
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| T |
40560308 |
ttacaaaaacaccaaaagatgaatagataactttatattaaagggaatataaacttacattttttgttttcttcacatgtttggtgcatgttcataattg |
40560209 |
T |
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| Q |
316 |
ggggtattcatttcttatcatgcttttcagcatttacggaggatgttaatggaggaaaggaggcctcatatccaattgaattcacattgaagtttctagg |
415 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40560208 |
ggggtattcctttcttatcaagcttttcagcatttacggaggatgttaatggaggaaaggaggcctcatatccaattgaattcacattgaagtttctagg |
40560109 |
T |
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| Q |
416 |
ctctcctttaacaatctccgcccaagttgattttggcacaacatgctcttcat |
468 |
Q |
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| T |
40560108 |
ctctcctttaacaatctccgcccaagttgattttggcacaacatgctcttcat |
40560056 |
T |
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