View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_high_21 (Length: 227)
Name: NF10725_high_21
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_high_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44048088 - 44047862
Alignment:
| Q |
1 |
ttgaaactattgttcgcttactaccaactcaatctaggaaaagctcagttccaatagcatttctttcatgtttattgaaaactgcaatagcaacattagt |
100 |
Q |
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| T |
44048088 |
ttgaaactattgttcgcttactaccaactcaatctaggaaaagctcagttccaatagcatttctttcatgtttattgaaaactgcaatagcaacattagt |
44047989 |
T |
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| Q |
101 |
atcaacttcttgtagaagtgatttggagaggcgaattggtttacaactcgatcaggcaattcttgaagacatacttattccaacgaattcaccttcgagt |
200 |
Q |
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| T |
44047988 |
atcaacttcttgtagaagtgatttggagaggcgaattggtttacaactcgatcaggcaattcttgaagacatacttattccaacgaattcaccttcgagt |
44047889 |
T |
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| Q |
201 |
gctcacaacacaatgtatgatatagat |
227 |
Q |
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| T |
44047888 |
gctcacaacacaatgtatgatatagat |
44047862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 39823937 - 39824103
Alignment:
| Q |
18 |
ttactaccaactcaatctaggaaaagctcag-ttccaatagcatttctttcatgtttattgaaaactgcaatagcaacattagtatcaacttcttgtaga |
116 |
Q |
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||||||||||||||||| |||||||| |||| |||||||||| ||||| ||| |||| |||||| ||||||||||| ||| |||||| |||||||||||| |
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| T |
39823937 |
ttactaccaactcaatcaaggaaaag-tcagattccaatagcttttctctcaagtttgttgaaatctgcaatagcatcatcagtatctacttcttgtaga |
39824035 |
T |
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| Q |
117 |
agtgatttggagaggcgaattggtttacaactcgatcaggcaattcttgaagacatacttattccaac |
184 |
Q |
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| T |
39824036 |
tctgatttggagagaaggattggtctgcaacttgaccaagcaattcttgaagatattctgattccaac |
39824103 |
T |
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