View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_high_22 (Length: 227)
Name: NF10725_high_22
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_high_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21272624 - 21272397
Alignment:
| Q |
1 |
caattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacacagtggacaattggtaatggagataaaatccgggatttt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21272624 |
caattccagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacacagtggacgattggtaatggagataaaatccgggatttt |
21272525 |
T |
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| Q |
101 |
tcaagataggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgctgcaacttaatacgaaggaactgcttcagcctggacag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21272524 |
tcaagataggtggctcgtaaacagcagtttagcacagcctgttttgcaatgcaatcagctgctgcaacttaatacgaaggaactgcttcagcctgggcag |
21272425 |
T |
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| Q |
200 |
aaatcatggaacttggatgtgttgcagc |
227 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
21272424 |
aaatcatggaaattggatgtgttgcagc |
21272397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 22009766 - 22009549
Alignment:
| Q |
8 |
agttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacacagtggacaattggtaatggagataaaatccgggatttttcaagat |
107 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| || ||||| ||||||||||| |||| ||||||||||| |
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| T |
22009766 |
agttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaaggtggaagatcggtaacggagataaaattcggg-tttttcaagat |
22009668 |
T |
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| Q |
108 |
aggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgctgcaacttaatacgaaggaactgcttcagcctggacagaaatcat |
206 |
Q |
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| T |
22009667 |
aggtggctcgtgaacggcggtttagcacagcctgctgcgtagtacaatcggttgctgcaacttaatgtgaaggaattgcttcagcctggtcaaaagtcgt |
22009568 |
T |
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| Q |
207 |
ggaacttggatgtgttgca |
225 |
Q |
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|||| ||||||||| |||| |
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| T |
22009567 |
ggaatttggatgtgctgca |
22009549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6956341 - 6956117
Alignment:
| Q |
1 |
caattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacacagtggacaattggtaatggagataaaatccgggatttt |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||| |||||||||| |||| |||| |
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| T |
6956341 |
caattcaagttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaacagagataaaattcggg-tttt |
6956243 |
T |
|
| Q |
101 |
tcaagataggtggctcgtaaacagcagtttagcacagcct-gtttgcaatgcaatcagctgctgcaacttaatacgaaggaactgcttcagcctggacag |
199 |
Q |
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|||||||||||||||| | || ||||||||||||||||| | ||| | ||||||| |||||||||||||| ||| ||| |||||||||| || || |
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| T |
6956242 |
tcaagataggtggctcatgaatggcagtttagcacagcctactgcgcagtacaatcagttgctgcaacttaatgtgaacgaattgcttcagccgggtcaa |
6956143 |
T |
|
| Q |
200 |
aaatcatggaacttggatgtgttgca |
225 |
Q |
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|| |||||||| ||||||||| |||| |
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| T |
6956142 |
aagtcatggaatttggatgtgctgca |
6956117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 6751617 - 6751394
Alignment:
| Q |
2 |
aattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacacagtggacaattggtaatggagataaaatccgggattttt |
101 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||| || | ||||| |
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| T |
6751617 |
aattcaagttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaagaaagataaaattcgag-ttttt |
6751519 |
T |
|
| Q |
102 |
caagataggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgctgcaacttaatacgaaggaactgcttcagcctggacaga |
200 |
Q |
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||||||||||||||| | || || ||||||||||||||| | ||| | ||||||| |||||||||||||| ||||||| ||||||| ||||| || | |
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| T |
6751518 |
caagataggtggctcatgaatggcggtttagcacagcctgctgcgcagtacaatcagttgctgcaacttaatgtgaaggaattgcttcaacctggtcaaa |
6751419 |
T |
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| Q |
201 |
aatcatggaacttggatgtgttgca |
225 |
Q |
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| T |
6751418 |
agtcatgggatttggatgtgctgca |
6751394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 6466908 - 6467131
Alignment:
| Q |
2 |
aattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacacagtggacaattggtaatggagataaaatccgggattttt |
101 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||||| | | ||||| |
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| T |
6466908 |
aattcaagttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaaggtggaagattggtaagggagataaaatttgag-ttttt |
6467006 |
T |
|
| Q |
102 |
caagataggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgctgcaacttaatacgaaggaactgcttcagcctggacaga |
200 |
Q |
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||||||||||||||| | || || |||||||| |||||| | ||| | ||||||| |||| ||||||||| ||||||| |||||| || || | | |
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| T |
6467007 |
caagataggtggctcatgaatggcggtttagcagagcctgctgcgcagtacaatcagttgctacaacttaatgtgaaggaattgcttccacccggtaaaa |
6467106 |
T |
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| Q |
201 |
aatcatggaacttggatgtgttgca |
225 |
Q |
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| |||||||| ||||||||| |||| |
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| T |
6467107 |
agtcatggaatttggatgtgctgca |
6467131 |
T |
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