View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_high_3 (Length: 467)
Name: NF10725_high_3
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 53603117 - 53603531
Alignment:
| Q |
19 |
ccatctaccttgttgctatgaaataaattttgattaattatgtaactaaatatatttgtgtgattaataactggttttttaattacatgtgatataattg |
118 |
Q |
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| T |
53603117 |
ccatctaccttgttgctatgaaataaattttgattaattatgtaactaaatatatttgtatgattaataactggtttttcaattacatgtgatataattg |
53603216 |
T |
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| Q |
119 |
ttatccatccatattctaatttgcagcaagattatcactcaagcgtcaattgttgcgttcttcagcaaccttgcagatgttggccttcatggttcaatga |
218 |
Q |
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| T |
53603217 |
ttatccatccatattctaatttgcagcaagattatcactcaagcgtcaattgttgcgttcttcagcaaccttgcagatgttggccttcatggttcaatga |
53603316 |
T |
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| Q |
219 |
tggtattttatgattttcaagttttatcatgtattttttaaccttaacttagtttgtgatgccactctattttttgtgtgcagtattacttaaaggctcg |
318 |
Q |
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| T |
53603317 |
tggtatgttatgattttcaagttttatcatgtattttttaaccttaacttagtttgtgatgccactctattttttgtgtgcagtattacttaaaggctcg |
53603416 |
T |
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| Q |
319 |
gtttcattttgataagaatcactttgctgacttaatgatcatttctggtattgcagggactgtgtcacaggtaatttttgtaagaagtgattttagttgt |
418 |
Q |
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| T |
53603417 |
gtttcattttgataagaatcactttgctgacttaatgatcatttctggtattgcagggactgtgtcacaggtaatttttgtaagacgtgattttagttgt |
53603516 |
T |
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| Q |
419 |
caaatatcacctatg |
433 |
Q |
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| T |
53603517 |
caaatatcacctatg |
53603531 |
T |
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