View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_high_4 (Length: 422)
Name: NF10725_high_4
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 33388096 - 33388503
Alignment:
| Q |
16 |
aggccgaataaagcaattgggtaccgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatc |
115 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388096 |
aggccgaataaagcaattgggtaccgctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatc |
33388195 |
T |
|
| Q |
116 |
tgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt-----------a |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33388196 |
tgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacacttccaaagcacgca |
33388295 |
T |
|
| Q |
205 |
ttaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatct |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33388296 |
ttaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaaccgtgtttgcaagattagatct |
33388395 |
T |
|
| Q |
305 |
caaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacct |
404 |
Q |
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| T |
33388396 |
caaaatttcaggataggtctgcggctgaagatcattactgaaacttatttcggtatagagtctatagcatttccccggttgagttcttccggcacgacct |
33388495 |
T |
|
| Q |
405 |
gatctctg |
412 |
Q |
| |
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|||||||| |
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| T |
33388496 |
gatctctg |
33388503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 46 - 400
Target Start/End: Original strand, 38779167 - 38779532
Alignment:
| Q |
46 |
catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatc |
145 |
Q |
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||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779167 |
catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc |
38779266 |
T |
|
| Q |
146 |
tcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatga |
234 |
Q |
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||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
38779267 |
tcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccatga |
38779366 |
T |
|
| Q |
235 |
agtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaag |
334 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38779367 |
agtcaaaatgaactaaatcatctatacccagtttcttcaatgtaagaactgtgttggcaagattagatctcaaaatttcaggataggtctgcggctgaag |
38779466 |
T |
|
| Q |
335 |
atcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacg |
400 |
Q |
| |
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||||||| |||||||| ||| |||||| |||||| ||||||||||||| ||||||||||| ||||| |
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| T |
38779467 |
atcattattgaaacttctttcggtataaagtctaaagcatttccccggctgagttcttccagcacg |
38779532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 20817008 - 20816601
Alignment:
| Q |
16 |
aggccgaataaagcaattgggtaccgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatc |
115 |
Q |
| |
|
|||||| ||||||||||||||||| || | ||||||||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||||||||||| |
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| T |
20817008 |
aggccggataaagcaattgggtactgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatc |
20816909 |
T |
|
| Q |
116 |
tgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt-----------a |
204 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| | |
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|
| T |
20816908 |
tgagggtccaacggaaactcactcataatcttacccaactttgttaagttaccttcatcatccattgcacccaagtaattcaacacttccaaagcgcgca |
20816809 |
T |
|
| Q |
205 |
ttaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatct |
304 |
Q |
| |
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|||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||| |
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| T |
20816808 |
ttaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttcttcaaagtaagaactgtgttggcgagattagatct |
20816709 |
T |
|
| Q |
305 |
caaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacct |
404 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |||||||||| ||||| |||||||| ||||| || |
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| T |
20816708 |
caaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatttccctggttgtgttcttccagcacgccca |
20816609 |
T |
|
| Q |
405 |
gatctctg |
412 |
Q |
| |
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|||||||| |
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|
| T |
20816608 |
gatctctg |
20816601 |
T |
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