View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_high_6 (Length: 340)
Name: NF10725_high_6
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 100 - 320
Target Start/End: Original strand, 21272078 - 21272302
Alignment:
| Q |
100 |
ttgcacaatggacagtctgttccaatttgaacacct----cattcagagctcagactcacacaactcggcaagcaatttcaagctaggtgccaaacaaat |
195 |
Q |
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| T |
21272078 |
ttgcaccatggacagtctgttccaatttgaacacctttctcattcagagttcagactcacacaactcggcaagcaatttcaagctaggtgccaaacaaat |
21272177 |
T |
|
| Q |
196 |
ttctaacctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctccattttccactaattctgttagacagaacttata |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21272178 |
ttctaacctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctccatttttcactaattctgttagacagaacttata |
21272277 |
T |
|
| Q |
296 |
ggctgagcggacactctaaactcca |
320 |
Q |
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| T |
21272278 |
ggctgagcggacactctaaactcca |
21272302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 21270990 - 21271077
Alignment:
| Q |
18 |
atgaatcagatttagtttcacccaagttaatctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcac |
105 |
Q |
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| T |
21270990 |
atgaatcagattaagtttcactcaagttaatctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcac |
21271077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 304
Target Start/End: Original strand, 6955862 - 6956004
Alignment:
| Q |
163 |
ggcaagcaatttcaagctaggtgccaaacaaa-tttctaacctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctc |
261 |
Q |
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| T |
6955862 |
ggcaagcaatttcgagctactcaccaaacaaagtttctaacctttggtggtacagctagtttccaaatcgaaatccaatccccctcgacctccagcccta |
6955961 |
T |
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| Q |
262 |
cattttccactaattctgttagacagaacttataggctgagcg |
304 |
Q |
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||||||| |||| |||||||||||| ||| |||| | |||||| |
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| T |
6955962 |
cattttctactagttctgttagacaaaacctatatgttgagcg |
6956004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 6955767 - 6955815
Alignment:
| Q |
48 |
tctacttttgttgcattgcatcagaatatgtgccgctgtttccgggaca |
96 |
Q |
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| T |
6955767 |
tctacttttgttacactgcatcagaatatgtgttgttgtttccgggaca |
6955815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 34 - 303
Target Start/End: Original strand, 6751018 - 6751285
Alignment:
| Q |
34 |
ttcacccaagttaatctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcacaatggacagtctgttccaatttgaacac |
133 |
Q |
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| T |
6751018 |
ttcacccaagtttctctacttttgttacaccgcatcagaatatgtgttgctgtttccgggacaatgttacaccatggacaaattgttccaatttgaacac |
6751117 |
T |
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| Q |
134 |
ctcattcagagctcagactcacacaactcggcaagcaatttcaagctaggtgccaaacaaa-tttctaacctttggtggtacagctagtttctaaatcaa |
232 |
Q |
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| T |
6751118 |
ccttctc---gctaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaagtttctaacctttggcggtacaactagttttcaaatcga |
6751214 |
T |
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| Q |
233 |
catccaatccccctcgacttccagagctccattttccactaattctgttagacagaacttataggctgagc |
303 |
Q |
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| T |
6751215 |
catctagtccccctcaacctccagccttggattttctactagttctgttagacaaaacctataggctgagc |
6751285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 306
Target Start/End: Complemental strand, 6467511 - 6467242
Alignment:
| Q |
34 |
ttcacccaagttaatctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcacaatggacagtctgttccaatttgaacac |
133 |
Q |
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|||||||||||| |||||||||||| || ||||||||||||||| | ||||||||||||| | || ||| ||||||| ||||||||||||||||| |
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| T |
6467511 |
ttcacccaagtttctctacttttgttacaccgcatcagaatatgtgttgttgtttccgggacaacgttacaccatggacaaattgttccaatttgaacac |
6467412 |
T |
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| Q |
134 |
ctcattcagagctcagactcacacaactcggcaagcaatttcaagctaggtgccaaacaaa-tttctaacctttggtggtacagctagtttctaaatcaa |
232 |
Q |
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| T |
6467411 |
ccttctc---gctaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaaatttctaacctttggtggtacaactagtttccaaatcga |
6467315 |
T |
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| Q |
233 |
catccaatccccctcgacttccagagctccattttccactaattctgttagacagaacttataggctgagcgga |
306 |
Q |
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| T |
6467314 |
catctagtccccctcaacctccagccttggattttctactagttttg-tagacaaaacctataggctgagcgga |
6467242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 22009174 - 22009389
Alignment:
| Q |
21 |
aatcagatttagtttcacccaagttaatctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcacaatggacagtctgtt |
120 |
Q |
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||||||||| | ||||||||||||| |||||||||||| || | |||||||||||||| ||||||| ||||||| |||| ||| |||||||| |||| |
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| T |
22009174 |
aatcagattcaatttcacccaagtttctctacttttgttacactacatcagaatatgtgttgctgttttcgggacaacattacaccatggacagattgtt |
22009273 |
T |
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| Q |
121 |
ccaatttgaacacctcattcagagctcagactcacacaactcggcaagcaatttcaagctaggtgccaaacaaa-tttctaacctttggtggtacagcta |
219 |
Q |
| |
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|||||||||||||| || ||| || ||||||| | | || ||||||||| ||||| |||||| ||| ||||||||||||||||||||| ||| |
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| T |
22009274 |
ccaatttgaacacccttctc---gctaagcctcacacgagttggaaagcaattttgagctactcgccaaataaagtttctaacctttggtggtacaacta |
22009370 |
T |
|
| Q |
220 |
gtttctaaatcaacatcca |
238 |
Q |
| |
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||||| |||| ||||||| |
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| T |
22009371 |
gtttccaaattgacatcca |
22009389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 8747220 - 8747320
Alignment:
| Q |
34 |
ttcacccaagttaatctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcacaatggacagtctgttccaatttgaacac |
133 |
Q |
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|||||||||||| |||||||||||| || |||||||||||||||| ||||||||||||||| |||| ||| ||||||| ||||||||||||||||| |
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| T |
8747220 |
ttcacccaagtttctctacttttgttacactgcatcagaatatgtgttgctgtttccgggacaacattacaccatggacaaattgttccaatttgaacac |
8747319 |
T |
|
| Q |
134 |
c |
134 |
Q |
| |
|
| |
|
|
| T |
8747320 |
c |
8747320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 19100786 - 19100977
Alignment:
| Q |
48 |
tctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcacaatggacagtctgttccaatttgaacacctcattcagagctc |
147 |
Q |
| |
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|||||||||||| || |||||||||||||||| | ||||||||||||| |||| ||| || | ||| ||||||||||||||||| | ||| ||| |
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| T |
19100786 |
tctacttttgttacactgcatcagaatatgtgttgttgtttccgggacaacattacaccattgtcagattgttccaatttgaacac--cgttc-ctgcta |
19100882 |
T |
|
| Q |
148 |
agactcacacaactcggcaagcaatttcaagctaggtgccaaacaaa-tttctaacctttggtggtacagctagtttctaaatcaacatccaatc |
241 |
Q |
| |
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|| | ||||| | | ||||||| ||||| ||||| ||||| ||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
19100883 |
agccacacacgagttggcaagcgatttcgagctattcaccaaataaagtttttaacctttgatggtacagctagtttccaaatcgacatccaatc |
19100977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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