View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10725_high_7 (Length: 331)

Name: NF10725_high_7
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10725_high_7
NF10725_high_7
[»] chr4 (3 HSPs)
chr4 (21-324)||(52350450-52350753)
chr4 (86-225)||(20303938-20304076)
chr4 (97-223)||(20298067-20298193)
[»] chr5 (11 HSPs)
chr5 (86-225)||(30473961-30474100)
chr5 (86-223)||(30481989-30482126)
chr5 (119-223)||(30398671-30398775)
chr5 (86-221)||(30434481-30434616)
chr5 (86-222)||(30339834-30339970)
chr5 (87-225)||(30429526-30429664)
chr5 (86-223)||(30243681-30243818)
chr5 (86-221)||(29870845-29870980)
chr5 (87-225)||(30523010-30523148)
chr5 (87-225)||(30563350-30563488)
chr5 (86-146)||(30395902-30395962)
[»] chr7 (1 HSPs)
chr7 (97-223)||(26705920-26706046)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 52350753 - 52350450
Alignment:
Q  21 agtcttcaccggagcaaatgttggaaggtcttcaatcccttcaaacaattgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatct 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350753 agtcttcaccggagcaaatgttggaaggtcttcaatcccttcgaacaattgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatct 52350654  T
Q  121 cacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattcca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350653 cacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattcca 52350554  T
Q  221 aaatttggtattgattagaataaaaaagcagacatgtttgaagaacattgagtcaacttgtttattcttatatacttccaccaccactgttattaccttt 320  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350553 aaatttggtattgaatagaataaaaaagcagacatgtttgaagaacattgagtcaacttgtttattcttatatacttccaccaccactgttattaccttt 52350454  T
Q  321 gctt 324  Q
    ||||    
T  52350453 gctt 52350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 20303938 - 20304076
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 185  Q
    |||||||||| |||||| ||| ||||||||   |||||||||||||||||  ||| ||||| ||| ||||||||||||||||| || || ||    ||||    
T  20303938 ggattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaa 20304037  T
Q  186 caggggaggactatgacaaaatagcgcacattccaaaatt 225  Q
    |||| ||||| |  ||||| |||||||| |||||||||||    
T  20304038 caggcgagga-ttggacaagatagcgcatattccaaaatt 20304076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 20298067 - 20298193
Alignment:
Q  97 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 196  Q
    |||||||||| | |||| | | |||||||| |||||| | ||||||||  || ||||||| |||||||||   ||||| || || ||||||||||||||     
T  20298067 cttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacattaaagttacgatgcaaagagggaacaggggaggat 20298166  T
Q  197 tatgacaaaatagcgcacattccaaaa 223  Q
    |  ||||| ||||| || |||||||||    
T  20298167 tgggacaagatagctcatattccaaaa 20298193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 30474100 - 30473961
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 185  Q
    |||||||||||||| || |||| ||||| | | ||||||||||||||| |  |||  ||| | | |||||||||||||||||||||||  ||  ||||||    
T  30474100 ggattgagatcctttcccgaatctattcaacacctcacttcacttgagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaa 30474001  T
Q  186 caggggaggactatgacaaaatagcgcacattccaaaatt 225  Q
    | || |||||||  ||||| ||||||||||||||||||||    
T  30474000 ccggtgaggactgggacaagatagcgcacattccaaaatt 30473961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 30482126 - 30481989
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 185  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||||| ||||| ||||| || |||||||||||| |||| ||||| || || ||||    
T  30482126 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaa 30482027  T
Q  186 caggggaggactatgacaaaatagcgcacattccaaaa 223  Q
    || ||||||| |  ||||| ||||| || |||||||||    
T  30482026 catgggaggattgggacaagatagctcatattccaaaa 30481989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 30398775 - 30398671
Alignment:
Q  119 ctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattc 218  Q
    |||||||| |||||||| ||||| ||   ||||||||||||||||||||| ||||| || || |||||||||||||| |  ||||| ||||| || ||||    
T  30398775 ctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattc 30398676  T
Q  219 caaaa 223  Q
    |||||    
T  30398675 caaaa 30398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 30434616 - 30434481
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 185  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||| ||||   ||||||||||||||||||||| ||||| || || ||||    
T  30434616 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaa 30434517  T
Q  186 caggggaggactatgacaaaatagcgcacattccaa 221  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  30434516 caggggaggattgggacaagatagctcatattccaa 30434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 30339834 - 30339970
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 185  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||||||||   | |||||||||||||| |||| ||||| || || ||||    
T  30339834 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaa 30339933  T
Q  186 caggggaggactatgacaaaatagcgcacattccaaa 222  Q
    |||||||||| |  ||||| ||||| || ||||||||    
T  30339934 caggggaggattgggacaagatagctcatattccaaa 30339970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 30429664 - 30429526
Alignment:
Q  87 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 186  Q
    ||||||||| |||||||||| ||||||   | ||||| ||||||||||| ||| | |||| || ||||||| |  ||| |||||||||||| || ||||     
T  30429664 gattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaaggagggaat 30429565  T
Q  187 aggggaggactatgacaaaatagcgcacattccaaaatt 225  Q
    ||| |||||||  ||||| ||||  |||||||| |||||    
T  30429564 aggagaggactgggacaagatagaacacattcctaaatt 30429526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 30243681 - 30243818
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 185  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| ||||||||  ||| ||||| | | || ||||||||| |||| ||||| || || ||||    
T  30243681 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaa 30243780  T
Q  186 caggggaggactatgacaaaatagcgcacattccaaaa 223  Q
    |||||||||| |  ||||| ||||| || |||||||||    
T  30243781 caggggaggattgggacaagatagctcatattccaaaa 30243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 29870980 - 29870845
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 185  Q
    |||||| ||| |||||| ||  |||||||| | ||||||||||||||| | ||| | |||   | ||||||||||||| |||| ||||| || || ||||    
T  29870980 ggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaa 29870881  T
Q  186 caggggaggactatgacaaaatagcgcacattccaa 221  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  29870880 caggggaggattgggacaagatagctcatattccaa 29870845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 30523010 - 30523148
Alignment:
Q  87 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 186  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30523010 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30523109  T
Q  187 aggggaggactatgacaaaatagcgcacattccaaaatt 225  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30523110 aggagaggactgggacatgatagaacacattccaaaatt 30523148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 30563350 - 30563488
Alignment:
Q  87 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 186  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30563350 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30563449  T
Q  187 aggggaggactatgacaaaatagcgcacattccaaaatt 225  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30563450 aggagaggactgggacatgatagaacacattccaaaatt 30563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 30395962 - 30395902
Alignment:
Q  86 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactattt 146  Q
    ||||||| |||||||| |||| |||||| |   ||||||||||||||||| ||||||||||    
T  30395962 ggattgaaatccttgcaagaaggtattccacgcctcacttcacttgaggttctgactattt 30395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 26706046 - 26705920
Alignment:
Q  97 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 196  Q
    |||||||||  |||||||| | |||||||| |||||| | ||||  |||||   ||||||||||||| |||| ||||| || || ||||||||||||||     
T  26706046 cttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggat 26705947  T
Q  197 tatgacaaaatagcgcacattccaaaa 223  Q
    |  ||||| ||||| || |||||||||    
T  26705946 tgggacaagatagctcatattccaaaa 26705920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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