View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_1 (Length: 576)
Name: NF10725_low_1
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 562
Target Start/End: Original strand, 56324360 - 56324915
Alignment:
| Q |
7 |
atggacatcataacttcatttaaggggtaaagtgtaaaccaaaaattatgggactgaagcaggacgcatgtttctttcatcagagagaacaaaccaccct |
106 |
Q |
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| T |
56324360 |
atggacaacataacttcatttaaggggtaaagtgtaaaccaaaaattatgggactgaagcaggacgcatgtttctttcatcagagagaacaaaccaccct |
56324459 |
T |
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| Q |
107 |
agaactatcgagtcttcaatgaaaaagtatttgggaaaacaatcagcaaaatccaaaaatcttagtagattcaaaatttccacaagataaatgaattact |
206 |
Q |
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| T |
56324460 |
agaactatcgagtcttcaatgaaaaagtatttgggaaaataatcagcaaaatccaaaaatcttagtagattcaaaatttctacaagataaatgaattact |
56324559 |
T |
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| Q |
207 |
agaacaattacattctgattgggctcaaatgtgagtttaattattagaaatgtgtgaaaccaaattagaacaacaaacattatgaatataaacttcgcat |
306 |
Q |
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| T |
56324560 |
agaacaattacattctgattgggctcaaatgtgagtttaattattagaaatgtgtgaaaccaaattagaacaataaacattatgaatataaacttcgcat |
56324659 |
T |
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| Q |
307 |
gttaaaacattggttgattatatcacattttggcactattgtctgaaacatgcaatataagcagcatacctcgccggcatctagtaccaaagcaattata |
406 |
Q |
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| T |
56324660 |
gttaaaacattggttgattatatcacattttggcactattgtctgaaacatgcaatataagcagcatacctcgccggcatctagtaccaaagcaattata |
56324759 |
T |
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| Q |
407 |
tgagcccggagtagactcttccttgattgcataatgctcaaggatgatgctcctttctccagttttgtcctctgcaaccaaccagcagtatcaacctgaa |
506 |
Q |
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| T |
56324760 |
tgagcccggagtagactcttccttgattgcataatgctcaaggatgatgctcctttctccagttttgtcctctgcaaccaaccagcagtatcaacctgaa |
56324859 |
T |
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| Q |
507 |
tggcagcaaaacatactaaattttaaaaatgtaaccggagtttcaatgttaaatgt |
562 |
Q |
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| T |
56324860 |
tggcagcaaaacattctaaattttaaaaatgtaaccggagtttcaatgttaaatgt |
56324915 |
T |
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