View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10725_low_10 (Length: 302)
Name: NF10725_low_10
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 42307269 - 42306994
Alignment:
| Q |
1 |
tgcacttacatgagattttcatctttcaggtttttgtggagtcatgttcgaatttactccccaacaagttgtgtgaatacctatatgatttggctgaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307269 |
tgcacttacatgagattttcatctttcaggtttttgtggagtcatgttcgaatttactccccaacaagttgtgtgaatacctatatgatttggctgaaat |
42307170 |
T |
|
| Q |
101 |
cttcacaaagaaattttattctaattgtcaggtatccaaggccataaattctgtctattaatttgaatgtcgttcatattaatcctatttgttgtgtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42307169 |
cttcacaaagaaattttattctaattgtcaggtatccaaggccataaattctgtctattaatttgaatgtcgttcatattaa-cctatttgttgtgtatt |
42307071 |
T |
|
| Q |
201 |
aatgtgaatgtctttgccaggttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaacacttact |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307070 |
aatgtgaatgtctttgccaggttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaacacttact |
42306994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 51571155 - 51571427
Alignment:
| Q |
1 |
tgcacttacatgagat-tttcatctttcaggtttttgtggagtcatgttcgaatttactccccaacaagttgtgtgaatacctatatgatttggctgaaa |
99 |
Q |
| |
|
|||||| || |||||| ||| |||||||||||||||||||||||||| ||||||||| | || ||| ||||||||||||||| ||| ||||||| |||| |
|
|
| T |
51571155 |
tgcactcacgtgagatattttatctttcaggtttttgtggagtcatgctcgaatttattaccaaacgtgttgtgtgaatacctgtataatttggccgaaa |
51571254 |
T |
|
| Q |
100 |
tcttcacaaagaaattttattctaattgtcaggtatccaaggccataaattctgtct--attaatttgaatgtcgttcatattaatcctatttgttgtgt |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || | || |||| | ||| || |||||||||| | | | || ||||||||| ||||| |
|
|
| T |
51571255 |
tcttcacaaagaaattttattctagttgtcaggtatcgaaagttat-aattttttctgcatcaatttgaatgcc---ctcactattcctatttgctgtgt |
51571350 |
T |
|
| Q |
198 |
attaatgtgaatgtctttgccaggttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaacactt |
274 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51571351 |
attaatttgaatgcctttgtcaggttgttgggtcgcctgaggaaactagtagactcttgttatgtgaagcaacactt |
51571427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 47971867 - 47971614
Alignment:
| Q |
21 |
atctttcaggtttttgtggagtcatgttcgaatttactccccaacaagttgtgtgaatacctatatgatttggctgaaatcttcacaaagaaattttatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| | || ||| ||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
47971867 |
atctttcaggtttttgtggagtcatgctcaaatttattaccaaacgtgttatgtgaatacctgtataatttgtctgaaatcttcacaaagaaattttatt |
47971768 |
T |
|
| Q |
121 |
ctaattgtcaggtatccaaggccataaattctgtctattaatttgaatgtcgttcatattaatcctatttgttgtgtattaatgtgaatgtctttgccag |
220 |
Q |
| |
|
| | ||| ||||||||| | | ||||||| | ||| | |||||||| | | | || | ||||||||| |||||||||||||||||| ||||| ||| |
|
|
| T |
47971767 |
caagttgccaggtatcccatgttataaatttttcctacgagtttgaatgccctccccat-attcctatttgctgtgtattaatgtgaatgcctttgtcag |
47971669 |
T |
|
| Q |
221 |
gttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaacactta |
275 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47971668 |
gttgttgggtcgccggaggaaactagtagactcttgttatgtgaagcaacactta |
47971614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 34035250 - 34035308
Alignment:
| Q |
212 |
ctttgccaggttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaac |
270 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
34035250 |
ctttggcaggttgtaggaacacctgaggaaactagtagacttttgctatgtgaagcaac |
34035308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University