View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_11 (Length: 296)
Name: NF10725_low_11
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 19577939 - 19578206
Alignment:
| Q |
16 |
cataccatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaacgtttact |
115 |
Q |
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| T |
19577939 |
cataccatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgacagttttcacggcgcggatggtaacgtttact |
19578038 |
T |
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| Q |
116 |
atggttttgctactcggaacgggttgtcggtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgt |
215 |
Q |
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| T |
19578039 |
atggttttgctactcggaacgggttgtctgtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgt |
19578138 |
T |
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| Q |
216 |
gcatgcggttatgtcggttatggtgtttgtggctatcgctttttcggattatagggttactaattgtt |
283 |
Q |
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| T |
19578139 |
gcatgcggttatgtcggttatggtgtttgtggctatcgctttttcggattatagggttactaattgtt |
19578206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 2787652 - 2787388
Alignment:
| Q |
19 |
accatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaacgtttactatg |
118 |
Q |
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|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
2787652 |
accatcatgatccatttccttttaattatatgtgcactctcttgtttcttttttcactttacagatagttttcacggcgctgatggtaatgtttactatg |
2787553 |
T |
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| Q |
119 |
gttttgctactcggaacgggttgtcggtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgca |
218 |
Q |
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| T |
2787552 |
gttttgttaccccgaaagggttatccgtttttaaaccaggacttgctgttttggttcctaacgacgacaaatacaaggtagggtttcaagattttgttca |
2787453 |
T |
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| Q |
219 |
tgcggttatgtcggttatggtgtttgtggctatcgctttttcggattatagggttactaattgtt |
283 |
Q |
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||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||| |
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| T |
2787452 |
tgcagttatgtcagttatggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtt |
2787388 |
T |
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