View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_13 (Length: 271)
Name: NF10725_low_13
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 5178577 - 5178353
Alignment:
| Q |
20 |
ttggtttatcagacataggtggacaggtagatatgaagctcatctatgggataacagctgtaaaaaagagggccaagctagaaaaggaaagcaaggtaag |
119 |
Q |
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| T |
5178577 |
ttggtttatcagacataggtggacaggtagatatgaagctcatctatgggataacagctgtaaaaaagagggccaagctagaaaaggaaagcaaggtaaa |
5178478 |
T |
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| Q |
120 |
aattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattagcttgattctattctccttagaaaagttgtgcattttg |
219 |
Q |
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| T |
5178477 |
aattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattaccttgattctattctccttagaaaagttgtgcattttg |
5178378 |
T |
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| Q |
220 |
tagcaatatttgtctctcactcttg |
244 |
Q |
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| T |
5178377 |
tagcaatatttgtctctcactcttg |
5178353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 13683566 - 13683499
Alignment:
| Q |
33 |
cataggtggacaggtagatatgaagctcatctatgggataacagctgtaaaaaagagggccaagctag |
100 |
Q |
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| T |
13683566 |
catagatggacaggaagatatgaagcccatctatgggataacagctgtagaagagaaggtcaagctag |
13683499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 40189462 - 40189561
Alignment:
| Q |
23 |
gtttatcagacataggtggacaggtagatatgaagctcatctatgggataacagctgtaaaaaagagggccaagctagaaaaggaaagcaaggtaagaat |
122 |
Q |
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| T |
40189462 |
gtttattaggcataggtggactgggagatatgaagctcatttatgggacaacagttgcaagaaagaaggccaaagcagaaaaggaagacaaggtaagaat |
40189561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 28590767 - 28590727
Alignment:
| Q |
39 |
tggacaggtagatatgaagctcatctatgggataacagctg |
79 |
Q |
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| T |
28590767 |
tggacaggtagatttgaagcacatctatgggataacagctg |
28590727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 4847067 - 4847017
Alignment:
| Q |
26 |
tatcagacataggtggacaggtagatatgaagctcatctatgggataacag |
76 |
Q |
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| T |
4847067 |
tatcaggcatagatggaccggtagatatgaagcacatttatgggataacag |
4847017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 30620032 - 30619947
Alignment:
| Q |
33 |
cataggtggacaggtagatatgaagctcatctatgggataacagctgtaaaaaagagggccaagctagaaaaggaaagcaaggtaa |
118 |
Q |
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| T |
30620032 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaagagaggggcagactcgcaaaggaaggcaaggtaa |
30619947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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