View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10725_low_16 (Length: 251)

Name: NF10725_low_16
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10725_low_16
NF10725_low_16
[»] chr4 (3 HSPs)
chr4 (8-241)||(29146341-29146579)
chr4 (16-102)||(7678054-7678142)
chr4 (8-102)||(4060891-4060985)
[»] chr3 (3 HSPs)
chr3 (12-102)||(37317973-37318063)
chr3 (12-86)||(38889200-38889274)
chr3 (9-53)||(44806062-44806106)
[»] chr2 (4 HSPs)
chr2 (8-102)||(19076751-19076845)
chr2 (8-77)||(6457008-6457077)
chr2 (9-53)||(43792921-43792965)
chr2 (8-55)||(6213596-6213641)
[»] chr1 (3 HSPs)
chr1 (12-102)||(51051474-51051564)
chr1 (12-77)||(37214051-37214116)
chr1 (9-46)||(47335075-47335112)
[»] chr5 (3 HSPs)
chr5 (14-101)||(5245932-5246018)
chr5 (11-99)||(12602057-12602143)
chr5 (8-55)||(27511592-27511639)
[»] chr6 (1 HSPs)
chr6 (8-54)||(29927829-29927874)
[»] chr8 (2 HSPs)
chr8 (15-102)||(5798297-5798384)
chr8 (3-70)||(36987953-36988017)
[»] chr7 (1 HSPs)
chr7 (23-81)||(7441681-7441739)
[»] scaffold0632 (1 HSPs)
scaffold0632 (30-102)||(3411-3483)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 29146579 - 29146341
Alignment:
Q  8 aatatttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctcacaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  || ||||||||||||||||||  |||||||| ||||||||||||| |||||    
T  29146579 aatatttattttttgaataatgaaataaaatgtatttttatatgtgt--gcctaaatagtgtgcccaaaatcttgtgaccatgtaagactttcttacaaa 29146482  T
Q  108 t---aatcattaatggtatgannnnnnnnccttaaaaaatggtatgannnnnnnnngttgactaagtattaaa-----tggtgtgattgaattgacaaat 199  Q
    |   |||||||||||||||||        |||| |||||||||||||         ||||||||||| |||||     |||||||||| |||||||||||    
T  29146481 taacaatcattaatggtatgattttttttccttcaaaaatggtatga-ttttttttgttgactaagtcttaaatggtgtggtgtgattaaattgacaaat 29146383  T
Q  200 cagactaggccacatgccatagaaaaacatcttcggcctatg 241  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  29146382 gagactaggccacatgccatagaaaaacatcttcggcctatg 29146341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 7678142 - 7678054
Alignment:
Q  16 ttttttgaataatgaaataaaatgtatttttatgtg--tgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctc 102  Q
    |||||| |||||| ||||||||||||||||||||||  ||||| | ||||| ||||||||||||  |||||||| || |||||||||||    
T  7678142 ttttttaaataataaaataaaatgtatttttatgtgtgtgtgcccctaaatggtgtgcccaaaagcttgtgaccatgcaagactttctc 7678054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 4060985 - 4060891
Alignment:
Q  8 aatatttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctc 102  Q
    ||||| ||||||||  ||||||||||||||||||||||||| | |||| || |||||  ||||| |||||  || |||||||| |||| ||||||    
T  4060985 aatatgtattttttagataatgaaataaaatgtatttttatatatgtgtgcctaaatgatgtgctcaaaagcttatgaccgtgcaagaatttctc 4060891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 37317973 - 37318063
Alignment:
Q  12 tttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctc 102  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||  ||||| ||||||| | || |||||||||||    
T  37317973 tttattttttaaataatgaaataaaatgtatttttatgtgtgtgcacctaaatagtgtgttcaaaattttgtgaacatgcaagactttctc 37318063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 38889274 - 38889200
Alignment:
Q  12 tttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgac 86  Q
    |||||||||| |||||||||||||||||||||||||| || ||| || ||||||||||| ||||||  |||||||    
T  38889274 tttattttttaaataatgaaataaaatgtatttttatatgcgtgtgcctaaatagtgtgtccaaaagcttgtgac 38889200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 44806106 - 44806062
Alignment:
Q  9 atatttattttttgaataatgaaataaaatgtatttttatgtgtg 53  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||||    
T  44806106 atatttattttttaaataattaaataaaatgtatttttgtgtgtg 44806062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 19076845 - 19076751
Alignment:
Q  8 aatatttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctc 102  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |  ||||| |||||  |||||||| || |||||||||||    
T  19076845 aatatttattttttaaataatgaaataaattgtatttttatgtgtgcgcgcttaagtgatgtgctcaaaaccttgtgaccatgcaagactttctc 19076751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 6457008 - 6457077
Alignment:
Q  8 aatatttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaa 77  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||   ||||| | ||||||||||||    
T  6457008 aatatttattttttaaataatgaaataaaatgtatttttatgtgtgttaacttaagtggtgtgcccaaaa 6457077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 43792921 - 43792965
Alignment:
Q  9 atatttattttttgaataatgaaataaaatgtatttttatgtgtg 53  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  43792921 atatttattttttaaataattaaataaaatgtatttttatgtgtg 43792965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 6213596 - 6213641
Alignment:
Q  8 aatatttattttttgaataatgaaataaaatgtatttttatgtgtgtg 55  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||||    
T  6213596 aatatttatttttt--ataatgaaataaaatgtatttttacgtgtgtg 6213641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 51051564 - 51051474
Alignment:
Q  12 tttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctc 102  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||| | || | ||||  |||||||| || |||| ||||||    
T  51051564 tttattttttaaataatgaaataaaatgtatttttatgtgtgtgcgcctaaataatatgtctaaaagcttgtgaccatgcaagattttctc 51051474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 37214051 - 37214116
Alignment:
Q  12 tttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaa 77  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||  ||||| ||||| ||||||    
T  37214051 tttaatttttaaataatgaaataaaatatatttttatgtgtgtgcgtctaaatggtgtgtccaaaa 37214116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 47335075 - 47335112
Alignment:
Q  9 atatttattttttgaataatgaaataaaatgtattttt 46  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  47335075 atatttattttttaaataattaaataaaatgtattttt 47335112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 5245932 - 5246018
Alignment:
Q  14 tattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttct 101  Q
    |||||||| ||||||||||||| ||||||||| ||||||||| |  | ||| |||||||||||| ||||||||| || ||||||||||    
T  5245932 tattttttaaataatgaaataagatgtatttt-atgtgtgtgtgtctgaatggtgtgcccaaaagtttgtgaccatgcaagactttct 5246018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 12602057 - 12602143
Alignment:
Q  11 atttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagacttt 99  Q
    ||||||||||| ||||| |||||||||||||||||  |||||||| || ||||| |||||| |||||  |||||||| || ||||||||    
T  12602057 atttattttttaaataacgaaataaaatgtatttt--tgtgtgtgtgcctaaatggtgtgctcaaaagcttgtgaccatgcaagacttt 12602143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 27511639 - 27511592
Alignment:
Q  8 aatatttattttttgaataatgaaataaaatgtatttttatgtgtgtg 55  Q
    |||||||||||||| |||||| ||||||||||||||| | ||||||||    
T  27511639 aatatttattttttaaataattaaataaaatgtatttgtctgtgtgtg 27511592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 29927874 - 29927829
Alignment:
Q  8 aatatttattttttgaataatgaaataaaatgtatttttatgtgtgt 54  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||    
T  29927874 aatatttattttttaaataatgaaa-aaaatgtatttttatgtgtgt 29927829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 5798297 - 5798384
Alignment:
Q  15 attttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctc 102  Q
    ||||||| ||||||||||||||||| |||||||| ||| ||||  ||| | |||||| |||||  |||||| | || |||||||||||    
T  5798297 attttttaaataatgaaataaaatgcatttttatatgtatgcgtctaagtggtgtgcacaaaagcttgtgatcatgcaagactttctc 5798384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 36987953 - 36988017
Alignment:
Q  3 aaaacaatatttattttttgaataatgaaataaaatgtatttttatgtgtgtgcgcttaaatagtgtg 70  Q
    |||||||||| |||||||  |||||| ||||||||||||||||  |||||| ||||||||||| ||||    
T  36987953 aaaacaatatatatttttc-aataattaaataaaatgtatttt--tgtgtgcgcgcttaaataatgtg 36988017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 7441681 - 7441739
Alignment:
Q  23 aataatgaaataaaatgtatttttatgtgtgtgcgcttaaata-gtgtgcccaaaaattt 81  Q
    |||||| |||||||||||||||||||||||||||| |  |||| ||||||||||||||||    
T  7441681 aataataaaataaaatgtatttttatgtgtgtgcg-tccaataggtgtgcccaaaaattt 7441739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 3411 - 3483
Alignment:
Q  30 aaataaaatgtatttttatgtgtgtgcgcttaaatagtgtgcccaaaaatttgtgaccgtgtaagactttctc 102  Q
    ||||||||||||||||| |||| ||| | |||| |  |||||||||||  |||||||| || |||||||||||    
T  3411 aaataaaatgtatttttctgtgggtgtgtttaagtgatgtgcccaaaagcttgtgaccatgcaagactttctc 3483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University