View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_18 (Length: 250)
Name: NF10725_low_18
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_18 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 6173542 - 6173302
Alignment:
| Q |
8 |
aagcagagattcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaact |
107 |
Q |
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| T |
6173542 |
aagcacagattcgtttgctcgaggagaaagcacgtaaggt--tcaacaagagaagtcacagttagaggatgcttgctcaaaatgtaaggagaagagaact |
6173445 |
T |
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| Q |
108 |
gaaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatgtaaaaaagaagaagcgggagttggattcaaatt |
207 |
Q |
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| T |
6173444 |
gaaattgtggaagaagctaaaaatgtagcctctacgaccatacaaacccgtgagaagattgataatctaaaaaagaagaagcgggagttggattcgaatt |
6173345 |
T |
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| Q |
208 |
atgatacacttgaaggagattatgccaaaatgaaattgtcacc |
250 |
Q |
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| T |
6173344 |
atgagacgcttgaaggaaattatgccataatgagactgtcacc |
6173302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 6135487 - 6135257
Alignment:
| Q |
8 |
aagcagagattcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaact |
107 |
Q |
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| T |
6135487 |
aagcacagattcgtttgctcgaggagaaagcacgtaaggtttt--acaggagaagtcacagttagaggatgcttgctcaaaatgtaaggagaagagatct |
6135390 |
T |
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| Q |
108 |
gaaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatgtaaaaaagaagaagcgggagttggattcaaatt |
207 |
Q |
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| T |
6135389 |
gaaattttggaagaagctaaaaatgtagcctctatgaccatacaaacccgcgagaagattgataatgtaaacaagaagaagcggaagttggattcaaatt |
6135290 |
T |
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| Q |
208 |
atgatacacttgaaggagattatgccaaaatga |
240 |
Q |
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| T |
6135289 |
atgatacgcttgaaggaaatcatgccataatga |
6135257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 6126880 - 6126812
Alignment:
| Q |
48 |
gttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaactgaaattgtg |
116 |
Q |
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| T |
6126880 |
gttcaacaagagaagtcgcagttagaagatggctgctccaaatgtaaagagaagaaaagtggaattgtg |
6126812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 37616220 - 37615999
Alignment:
| Q |
8 |
aagcagagattcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaact |
107 |
Q |
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| T |
37616220 |
aagcacagaatcgtttgcacaaggagaaagcacgtagggt--tcaacaagagaagccatagttagaggatgcttgctcaaaatgtaaggagaagataact |
37616123 |
T |
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| Q |
108 |
gaaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatgtaaaaaagaagaagcgggagttggattcaaatt |
207 |
Q |
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| T |
37616122 |
gaaattgtggaagaagctaaaaatgtagcctctattaccatacaaacccgcgagaagattgataatgtaaaaaa---gaagcgggagttgaattcaaatt |
37616026 |
T |
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| Q |
208 |
atgatacacttgaaggagattatgcca |
234 |
Q |
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| T |
37616025 |
atgatacacttgaaggaaattatgcca |
37615999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 22083269 - 22083414
Alignment:
| Q |
18 |
tcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaactgaaattgtgg |
117 |
Q |
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| T |
22083269 |
tcgtttgcacgaggagaaagcacgtagggt--tcaacaagagaagccatagttagaggatgcttgctcaaaatgtaaggagaagataactgaaattgtgg |
22083366 |
T |
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| Q |
118 |
aagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaaga |
165 |
Q |
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| T |
22083367 |
aagaagctaaaaatgtagcctctattaccatacaaacccgcgacaaga |
22083414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 22083411 - 22083462
Alignment:
| Q |
183 |
aagaagcgggagttggattcaaattatgatacacttgaaggagattatgcca |
234 |
Q |
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| T |
22083411 |
aagaagcgggagttgaattcaaattatgatacacttgaaggaaattatgcca |
22083462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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