View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_19 (Length: 249)
Name: NF10725_low_19
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 53603625 - 53603867
Alignment:
| Q |
1 |
tgcctatttttgctcctactttgggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccctttgtaattttata |
100 |
Q |
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| T |
53603625 |
tgcctatttttgctcctactttgggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccttttgtaattttata |
53603724 |
T |
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| Q |
101 |
agtnnnnnnnnn--tacacatttttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgt |
198 |
Q |
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| T |
53603725 |
agtaaaaaaaaaaatacacatttttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgt |
53603824 |
T |
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| Q |
199 |
cttttgctactctattgctaattacaatttacaagttcatctc |
241 |
Q |
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| T |
53603825 |
cttttgctactctattgctaattacaatttacaagttcatctc |
53603867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 39170622 - 39170530
Alignment:
| Q |
126 |
aaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgcta |
218 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
39170622 |
aaattataaattagtgttatcaaattgaatgtagatgttcatttacagtatagcatggtcctcttgggtatgtctttagctactctattgcta |
39170530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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