View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_2 (Length: 518)
Name: NF10725_low_2
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Complemental strand, 44047794 - 44047299
Alignment:
| Q |
11 |
gagatggacatcaaatgatgtacgagtatgaatttgacagtcctggatctccaaaacaaagctcaattcttaaggtatccaaattacttgacaattttct |
110 |
Q |
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| T |
44047794 |
gagatgaaaatcaaatgatgtacgagtatgaatttgacagtcctggatctccaaaacaaagctcaattcttaaggtatccaaattacttgacaattttct |
44047695 |
T |
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| Q |
111 |
cgctgaagtagcactagactcaaacttgttgccatcaaaattcatagcacttgcagaactacttccggatcatgctcgcgttacaagcgatggactctat |
210 |
Q |
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| T |
44047694 |
cgctgaagtagcactagactcaaacttgttgccatcaaaattcatagcacttgcagaactacttccggatcatgcccgcgttacaagcgatggactctat |
44047595 |
T |
|
| Q |
211 |
cgagctgttgacatcttcctcaaggttcgaactcaaaatcgagcttcttctattgaaaacactattaagaatttcattactcttctgtcttgtaaaaatg |
310 |
Q |
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| T |
44047594 |
cgagctgttgacatcttcctcaaggttagaactcaaaatcgagtttcttctattgaaaacactattaagaatttcattactcttctgtcttgtaaaaatg |
44047495 |
T |
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| Q |
311 |
ttttacacatacgtttatttatagcccataacgttagaaaataatattatga---cacaagagagtaaaatttgattgcatgtaagaattttgacagtgt |
407 |
Q |
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| T |
44047494 |
ttttacacatacgtttatttatagcccataacgttagaaaataatattatgagacaacaagagagtaaaattttattgcatgtaagaattttgacagtgt |
44047395 |
T |
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| Q |
408 |
gattgcacttttgcatacttattaaactcttaagtaacagccttgctgccacaacactgtgattcaactcttgttgcttcgatttgtaaataatga |
503 |
Q |
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| T |
44047394 |
gattgcactgttgcatacttattaaactcttaagtaacagccttgctgccacaacactgtgattcaactcttgttgcttcgatttgtaaataatga |
44047299 |
T |
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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 39824240 - 39824439
Alignment:
| Q |
37 |
tatgaatttgacagtcctggatctccaaaacaaagctcaattcttaaggtatccaaattacttgacaattttctcgctgaagtagcactagactcaaact |
136 |
Q |
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||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||| || || || | ||| ||||||||||| ||||| |||||| |
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| T |
39824240 |
tatgattttgatagcccaggatcgccaaaacaaagctcaattcttaaggtatccaaattgctggataactatcttgctgaagtagctttagacccaaact |
39824339 |
T |
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| Q |
137 |
tgttgccatcaaaattcatagcacttgcagaactacttccggatcatgctcgcgttacaagcgatggactctatcgagctgttgacatcttcctcaaggt |
236 |
Q |
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| T |
39824340 |
tgcttccatcaaagttcatttcacttgctgagttacttcctgatcatgcgcgaattgtaagcgatggactctatagagcagtcgatatcttccttaaggt |
39824439 |
T |
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