View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_21 (Length: 241)
Name: NF10725_low_21
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_21 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 20751167 - 20751390
Alignment:
| Q |
18 |
tcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtagga |
117 |
Q |
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| T |
20751167 |
tcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtagga |
20751266 |
T |
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| Q |
118 |
tggactggatcccaaaaaatatggtcttgtctattggcacaaaggcttgaaactggtgtacnnnnnnnttgagcattcacctcaccaagtccacaacaag |
217 |
Q |
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| T |
20751267 |
tggactggatcccaaaaaatatggtcttgtctattggcacaaaggcttgaaactggtgtacaaaaaaattgagcattcagctcaccaagtccacaacaag |
20751366 |
T |
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| Q |
218 |
catctttcacgtctttaaatcctg |
241 |
Q |
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| T |
20751367 |
catctttcacgtctttaaatcctg |
20751390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 20755672 - 20755895
Alignment:
| Q |
18 |
tcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtagga |
117 |
Q |
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||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||||| | || ||||||||||||||||| |
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| T |
20755672 |
tcaaagagctagtagttgttccatattaataggagatgtgtattttgaaggtccattataaagtttatccacaaaagtgcgtgtggctgcctcagtagga |
20755771 |
T |
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| Q |
118 |
tggactggatcccaaaaaatatggtcttgtctattggcacaaaggcttgaaactggtgtacnnnnnnnttgagcattcacctcaccaagtccacaacaag |
217 |
Q |
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| T |
20755772 |
tgaaattgatcccaaaatatatggtcttgtctattagaacaaatgattgaaattggtgtacacagaaattgagaattcaattcaccaagtccacaacaag |
20755871 |
T |
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| Q |
218 |
catctttcacgtctttaaatcctg |
241 |
Q |
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| T |
20755872 |
catctttcacatctgcaaatcctg |
20755895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 20799511 - 20799632
Alignment:
| Q |
39 |
catattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaata |
138 |
Q |
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|||||||| |||| ||||||||| ||| |||||||| ||||||||||| |||| || || | ||||||||||||||||||||| ||||||||| ||| |
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| T |
20799511 |
catattaacaggagatgtgtattgtgacggtccattataaagtctatcgacaattatgcgagttactgcctcagtaggatggactgaatcccaaaagata |
20799610 |
T |
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| Q |
139 |
tggtcttgtctattggcacaaa |
160 |
Q |
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| T |
20799611 |
tggtcttgtctattggtacaaa |
20799632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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