View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10725_low_22 (Length: 240)

Name: NF10725_low_22
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10725_low_22
NF10725_low_22
[»] chr3 (2 HSPs)
chr3 (18-233)||(26609794-26610009)
chr3 (171-230)||(47190181-47190240)
[»] chr1 (6 HSPs)
chr1 (171-230)||(23802614-23802673)
chr1 (171-225)||(4524585-4524639)
chr1 (168-227)||(25071638-25071697)
chr1 (171-229)||(5346051-5346109)
chr1 (167-215)||(6886598-6886646)
chr1 (166-230)||(3889963-3890029)
[»] chr2 (6 HSPs)
chr2 (168-221)||(14433839-14433892)
chr2 (168-230)||(16389466-16389528)
chr2 (171-230)||(1001375-1001434)
chr2 (168-223)||(8083822-8083877)
chr2 (171-219)||(8686909-8686957)
chr2 (168-207)||(32484071-32484110)
[»] chr4 (4 HSPs)
chr4 (168-230)||(12141783-12141845)
chr4 (171-228)||(45036777-45036834)
chr4 (171-227)||(789793-789849)
chr4 (171-230)||(43698764-43698821)
[»] chr5 (4 HSPs)
chr5 (168-227)||(30316529-30316588)
chr5 (171-227)||(15030467-15030523)
chr5 (159-230)||(7471454-7471525)
chr5 (171-230)||(21144682-21144741)
[»] chr8 (1 HSPs)
chr8 (168-229)||(23431717-23431778)
[»] chr7 (2 HSPs)
chr7 (168-213)||(786234-786279)
chr7 (168-217)||(31311983-31312032)
[»] chr6 (2 HSPs)
chr6 (178-223)||(22719346-22719391)
chr6 (171-227)||(12521945-12522001)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 26610009 - 26609794
Alignment:
Q  18 gttggtagaccaagaccaaacttttttcaaaggtgttttcccaacaaaataccggtatgtttttgttcttactcttagtctttctaaaatggtctataaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26610009 gttggtagaccaagaccaaacttttttcaaaggtgttttcccaataaaataccggtatgtttttgttcttactcttagtctttctaaaatggtctataaa 26609910  T
Q  118 attgataagtttagtctctgaaattgtcttacgactctgtttgtcggtattcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgact 217  Q
    |||| ||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||| |||||||||||||||||||| | |||||||    
T  26609909 attggtaagtttagtctctgaaattgtcttacgactctatttgccgatattcaaaccgagtttctcaagattgaagagagaaactctcaacctagtgact 26609810  T
Q  218 tctcggaagacagaca 233  Q
    |||||| |||||||||    
T  26609809 tctcgggagacagaca 26609794  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 47190240 - 47190181
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    ||||||||||||  ||||||||||||||||||||||| ||| |||| ||| |||||||||    
T  47190240 aaccgagtttctcgaggttgaagagagaaactctcaaccaaatgacctcttggaagacag 47190181  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 23802614 - 23802673
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23802614 aaccgagtttctcgaggttgaagagagaaactctcaaccaagtgacttctcgggagacag 23802673  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 4524639 - 4524585
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaa 225  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  4524639 aaccgagtttcttaaggttgaagagagaaactctcaaccaaatgatttctcggaa 4524585  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 25071697 - 25071638
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaaga 227  Q
    |||||||||||||||| || ||||| |||||||||||||| ||| |||||||||||||||    
T  25071697 tcaaaccgagtttcttgagattgaaaagagaaactctcaaccaaatgacttctcggaaga 25071638  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 5346051 - 5346109
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagaca 229  Q
    ||||||||| || || ||||||||||||||||||||| ||||||||||||||| |||||    
T  5346051 aaccgagttcctcaaagttgaagagagaaactctcaaccaagtgacttctcgggagaca 5346109  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 6886646 - 6886598
Alignment:
Q  167 ttcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtga 215  Q
    ||||||||||||||||  |||||||||||||||||| |||| |||||||    
T  6886646 ttcaaaccgagtttctcgaggttgaagagagaaactttcaaccaagtga 6886598  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 3889963 - 3890029
Alignment:
Q  166 attcaaaccgagtttcttaaggttgaagagagaaa--ctctcaatcaagtgacttctcggaagacag 230  Q
    |||| |||||||||||| ||||||||||||| |||  ||||||| ||||| ||||||||| ||||||    
T  3889963 attcgaaccgagtttctcaaggttgaagagataaactctctcaaccaagttacttctcgggagacag 3890029  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 14433892 - 14433839
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctc 221  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  14433892 tcaaaccgagtttctcgaggttgaagagagaaactctcaaccaagtgacttctc 14433839  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 16389528 - 16389466
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    |||||||||||||||   ||||||||||||||||| |||| ||||||||||||||| ||||||    
T  16389528 tcaaaccgagtttctcggggttgaagagagaaactatcaaccaagtgacttctcgggagacag 16389466  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 1001434 - 1001375
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||| | |||||||||||    
T  1001434 aaccgagtttctcgaggttgaagagagaaattctcaaccaagtgacctttcggaagacag 1001375  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 8083822 - 8083877
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcgg 223  Q
    ||||||||||||||| |||||| |||||||||||||||||  | ||||||||||||    
T  8083822 tcaaaccgagtttctcaaggttaaagagagaaactctcaactacgtgacttctcgg 8083877  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 8686909 - 8686957
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttc 219  Q
    ||||||||||||  ||| ||||||||||||||||||| |||||||||||    
T  8686909 aaccgagtttctcgaggatgaagagagaaactctcaaccaagtgacttc 8686957  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 32484071 - 32484110
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaa 207  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  32484071 tcaaaccgagtttctcgaggttgaagagagaaactctcaa 32484110  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 12141783 - 12141845
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    |||||||||||||||  |||||||||||||| |||||||| ||||| ||||||||| ||||||    
T  12141783 tcaaaccgagtttctcgaggttgaagagagatactctcaaccaagtaacttctcgggagacag 12141845  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 45036777 - 45036834
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagac 228  Q
    |||||||||||  |||||||||||||||||||||||| || |||||||||||| ||||    
T  45036777 aaccgagtttcacaaggttgaagagagaaactctcaaccatgtgacttctcgggagac 45036834  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 789793 - 789849
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaaga 227  Q
    ||||||||||||| || ||||| |||||||||||||| ||| |||||||||||||||    
T  789793 aaccgagtttcttgagattgaaaagagaaactctcaaccaaatgacttctcggaaga 789849  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 43698821 - 43698764
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    |||| |||||||| |||||||||||||||  |||||| ||||||||||||||| ||||||    
T  43698821 aaccaagtttcttgaggttgaagagagaa--tctcaaccaagtgacttctcgggagacag 43698764  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 30316529 - 30316588
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaaga 227  Q
    |||||||||||||||| || ||||| |||||||||||||| ||| ||| |||||||||||    
T  30316529 tcaaaccgagtttcttgagattgaaaagagaaactctcaaccaaatgatttctcggaaga 30316588  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 15030523 - 15030467
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaaga 227  Q
    ||||||||||||| || ||||| |||||||||||||| ||| | |||||||||||||    
T  15030523 aaccgagtttcttgagattgaaaagagaaactctcaaccaaataacttctcggaaga 15030467  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 7471525 - 7471454
Alignment:
Q  159 tgtcggtattcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    |||||| |||||||  ||||||||  |||||||||| |||||||||||| |||||||| ||| || ||||||    
T  7471525 tgtcgggattcaaagagagtttctcgaggttgaagaaagaaactctcaaccaagtgacctcttgggagacag 7471454  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 21144741 - 21144682
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagacag 230  Q
    ||||||||||||   ||||||||||||||||||||||  |||||| ||||||| ||||||    
T  21144741 aaccgagtttctgtcggttgaagagagaaactctcaacaaagtgatttctcgggagacag 21144682  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 23431778 - 23431717
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaagaca 229  Q
    |||||||||||||||  | |||||||||||||||| ||||  |||||||||| |||||||||    
T  23431778 tcaaaccgagtttctagaagttgaagagagaaactttcaactaagtgacttcccggaagaca 23431717  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 786279 - 786234
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagt 213  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||    
T  786279 tcaaaccgagtttctcaaggttgaagagggaaactctcaaacaagt 786234  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 31312032 - 31311983
Alignment:
Q  168 tcaaaccgagtttcttaaggttgaagagagaaactctcaatcaagtgact 217  Q
    ||||||||||| |||  ||||||||||||||||||||||| || ||||||    
T  31312032 tcaaaccgagtctctcgaggttgaagagagaaactctcaaccatgtgact 31311983  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 22719391 - 22719346
Alignment:
Q  178 tttcttaaggttgaagagagaaactctcaatcaagtgacttctcgg 223  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||    
T  22719391 tttcttcaggttgaaaagagaaactctcaaccaagtgacttctcgg 22719346  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 12521945 - 12522001
Alignment:
Q  171 aaccgagtttcttaaggttgaagagagaaactctcaatcaagtgacttctcggaaga 227  Q
    ||||||||||||| || ||||| ||||||| |||||||||| | |||||||||||||    
T  12521945 aaccgagtttcttgagattgaaaagagaaattctcaatcaaataacttctcggaaga 12522001  T

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