View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10725_low_31 (Length: 219)

Name: NF10725_low_31
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10725_low_31
NF10725_low_31
[»] chr4 (1 HSPs)
chr4 (1-200)||(52350998-52351192)
[»] chr5 (9 HSPs)
chr5 (48-183)||(30399150-30399283)
chr5 (1-72)||(30474413-30474484)
chr5 (136-183)||(29852470-29852517)
chr5 (136-183)||(29871357-29871404)
chr5 (136-183)||(30059528-30059575)
chr5 (136-183)||(30339410-30339457)
chr5 (138-183)||(30482577-30482622)
chr5 (55-111)||(30205602-30205658)
chr5 (139-183)||(30243257-30243301)
[»] chr7 (1 HSPs)
chr7 (138-183)||(26706505-26706550)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 52350998 - 52351192
Alignment:
Q  1 aagggatggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacgagggaacatctcccccctttccattttcaataaccgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||    
T  52350998 aagggatggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacg---gaacatctcccgcctttccattttcaataaccgt 52351094  T
Q  101 tcaaagtttggcaaacctagtaacgagacactttttccagagatgggaaaaccctcacccccacaccatcgtgagattcatcaacgtccacataccgcac 200  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351095 tcaaagtttggcaaacctagtaatgagac--tttttccagagatgggaaaaccctcacccccacaccatcgtgagattcatcaacgtccacataccgcac 52351192  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 30399150 - 30399283
Alignment:
Q  48 tcaaatcagaaagacgagggaacatctcccccctttccattttcaataaccgttcaaagtttggcaaacctagtaacgagacactttttccagagatggg 147  Q
    |||| |||||||||| ||| ||||||||||| ||||||| |||||||||||  || | |||||| |  | ||||||   ||   ||  ||||||||||||    
T  30399150 tcaactcagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggcatagtaaatggag--ttcctccagagatggg 30399247  T
Q  148 aaaaccctcacccccacaccatcgtgagattcatca 183  Q
    |||||||||||| |||||||||| ||||||||||||    
T  30399248 aaaaccctcacctccacaccatcctgagattcatca 30399283  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 30474413 - 30474484
Alignment:
Q  1 aagggatggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacgagggaacat 72  Q
    ||||||||||||| || |||||||||||||||||||| ||  ||||||||||| ||||||| || |||||||    
T  30474413 aagggatggaaggcatggcaacacaagtttagggcaatcaataatggtcaaattagaaagaagaaggaacat 30474484  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 29852470 - 29852517
Alignment:
Q  136 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 183  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  29852470 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 29852517  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 29871357 - 29871404
Alignment:
Q  136 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 183  Q
    |||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  29871357 tccagagatgggaaaatcctcacctccataccatcctgagattcatca 29871404  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 30059528 - 30059575
Alignment:
Q  136 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 183  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  30059528 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 30059575  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 30339457 - 30339410
Alignment:
Q  136 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 183  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  30339457 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 30339410  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 30482577 - 30482622
Alignment:
Q  138 cagagatgggaaaaccctcacccccacaccatcgtgagattcatca 183  Q
    ||||||| |||||||| ||||| |||||||||| ||||||||||||    
T  30482577 cagagatcggaaaaccatcacctccacaccatcctgagattcatca 30482622  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 30205602 - 30205658
Alignment:
Q  55 agaaagacgagggaacatctcccccctttccattttcaataaccgttcaaagtttgg 111  Q
    |||||||| ||| |||||||| || ||||||| ||||||||||| ||| ||||||||    
T  30205602 agaaagacaaggaaacatctcacctctttccactttcaataacccttctaagtttgg 30205658  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 30243301 - 30243257
Alignment:
Q  139 agagatgggaaaaccctcacccccacaccatcgtgagattcatca 183  Q
    ||||||||||||||||||||| ||| |||||| | ||||||||||    
T  30243301 agagatgggaaaaccctcacctccataccatcctcagattcatca 30243257  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 26706505 - 26706550
Alignment:
Q  138 cagagatgggaaaaccctcacccccacaccatcgtgagattcatca 183  Q
    |||||||||||||||||||||| |||  ||||| ||||||||||||    
T  26706505 cagagatgggaaaaccctcacctccatgccatcctgagattcatca 26706550  T

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