View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_6 (Length: 417)
Name: NF10725_low_6
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 215 - 410
Target Start/End: Complemental strand, 4572092 - 4571903
Alignment:
| Q |
215 |
tcatcactcactcttggttatgctaaagattcatcatttcttaagctctcatcaatgcaagtgatggaaaaagatgcatcacaatcacaaccttgttgca |
314 |
Q |
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| T |
4572092 |
tcatcactcactcttggttatgctaaagattcatcatttcttaagctctcatcaatgcaagtgatgga------tccatcacaatcacaaccttgttgca |
4571999 |
T |
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| Q |
315 |
caaacttgcaggatggtgagaaaaatgcattctcaccttcttctgcaagaaattcagctttaccaaacaggtctcagaaaaggtactcctttgctt |
410 |
Q |
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| T |
4571998 |
caaacttgcaagatggtgagaaaaatacattctcaccttcttctgcaagaaattcagctttaccaaacaggtctcagaaaaggtactcctttgctt |
4571903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 4572288 - 4572154
Alignment:
| Q |
19 |
aattcaacttgtttcaatctagaaaaaggaagaataagaaagttgaagaaattttgtaagcaacaagatgtggcaaagaagccacaagtgttctttagag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4572288 |
aattcaacttgtttcaatctagaaaaaggaagaataagaaagttgaagaaattttgtaagcaataagatgtggcaaagaagccacaagtgttctttagag |
4572189 |
T |
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| Q |
119 |
gagaggaagttggagctcagacttggtccacctgg |
153 |
Q |
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| T |
4572188 |
gagaggaagttggagcttagacttggtccacctgg |
4572154 |
T |
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