View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10725_low_8 (Length: 336)
Name: NF10725_low_8
Description: NF10725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10725_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 17500269 - 17500438
Alignment:
| Q |
150 |
ggcctctctttggtaaaaggaatatgtaacagaaccaaatggctagatttctggcatatctatctgtcagctatttattcctatttatcaaactcagtta |
249 |
Q |
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| T |
17500269 |
ggcctctctttggtaaaaggaatatgcaacagaaccaaatggctagatttctggcatatctatctgtcagctatttattcctatttatcaaactcagtta |
17500368 |
T |
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| Q |
250 |
gttcttattgcatatctacctctctatctctaatataaagcttgtcatcattgttaacattttcaagtat |
319 |
Q |
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| T |
17500369 |
gttcttattgcatatctacctctctatctctaatataaagcttgtcatcattgttaacatttacaagtat |
17500438 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 17500165 - 17500222
Alignment:
| Q |
52 |
catctgaataattgtaagctttgtcctatattgaattctaccaagtcaatatgttggg |
109 |
Q |
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| T |
17500165 |
catctgaataattgtaagctttgtcctatattaaattctaccaagtcaatatgttggg |
17500222 |
T |
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