View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10726_high_1 (Length: 466)
Name: NF10726_high_1
Description: NF10726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10726_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Complemental strand, 37862788 - 37862329
Alignment:
| Q |
20 |
tcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatcaaaagaagacggacttgccacaaccggcgagggacttgaatggggtgtgcttt |
119 |
Q |
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| T |
37862788 |
tcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatcaaaagaagacggacttgccacaaccggcgagggactcgaatggggtgtgcttt |
37862689 |
T |
|
| Q |
120 |
tcggttttggtcccggactcacaatcgagactgttgtgctccgtagtgtgtccacctaaatcctcgcatcttactaagtcaacaaattctattttccccc |
219 |
Q |
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| T |
37862688 |
tcggttttggtcccggactcacaatcgagactgttgtgctccgtagtgtgtccacctaaatcctcacatcttactaagtcaacaaattctattttccccc |
37862589 |
T |
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| Q |
220 |
aa---------------------aatcaaatgtattctttctttctttgtatttctgttcctcattgattacttttcacatgtttcctatgcctataatt |
298 |
Q |
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| T |
37862588 |
aagctctttaccttttcgcccaaaatcaaatgtattctttctttctttgtatttctgttcctcattgattactttccacatgtttcctatgcctataatt |
37862489 |
T |
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| Q |
299 |
aatcactattatcactgcatgatataaatctttgattttctgttatctgataaaatcttcagatacaaggaatgtataaaatcttcagatataaggaatg |
398 |
Q |
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| T |
37862488 |
aatcacgattatcactgcgtgatataaatctttgattttctgttatctgataaaatcttcagatacaaggaatgtataaaatcttcagatataaggaatg |
37862389 |
T |
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| Q |
399 |
tatcaacaagattgactcctttcatttcatattgttaatcgcgtcattgaattctctgct |
458 |
Q |
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| T |
37862388 |
tatcaacaagattgactcctttcatttcatattgttaatcgcgtcattgaattctctgct |
37862329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 39030811 - 39030988
Alignment:
| Q |
36 |
tattcatcttggatgagatgaggatgaaatcaaaagaagacggacttgccacaaccggcgagggacttgaatggggtgtgcttttcggttttggtcccgg |
135 |
Q |
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||||||| |||||||||||||||| ||| ||||||||||| ||||||| |||||| || || |||||||||||||| |||||||| ||||||| || || |
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| T |
39030811 |
tattcattttggatgagatgaggaggaagtcaaaagaagaaggacttggcacaacaggagaaggacttgaatggggcgtgcttttaagttttggacctgg |
39030910 |
T |
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| Q |
136 |
actcacaatcgagactgttgtgctccgtagtgtgtccacctaaatcctcgcatcttactaagtcaacaaattctattt |
213 |
Q |
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| T |
39030911 |
actcactgtcgagactgttgtgctccatagtgtggccacctaaatcctcacattttaccaaggcaacaagttctattt |
39030988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 37858762 - 37858621
Alignment:
| Q |
20 |
tcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatcaaaagaagacggacttgccacaaccggcgagggacttgaatggggtgtgcttt |
119 |
Q |
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|||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| || ||||||||||| || | |
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| T |
37858762 |
tcaagtgcatgtgtgttattcatcttggatgagatgaggaggaagtcaaaagaagacggacttgccacaacaggcgaggggctggaatggggtgtcctat |
37858663 |
T |
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| Q |
120 |
tcggttttggtcccggactcacaatcgagactgttgtgctcc |
161 |
Q |
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| T |
37858662 |
ttggtttcgggcccggactcactgttgagactgtagtgctcc |
37858621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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