View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10726_high_5 (Length: 225)
Name: NF10726_high_5
Description: NF10726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10726_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 41760470 - 41760694
Alignment:
| Q |
1 |
tagtaagcctaatgaacaaaatgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaaaatattgaaaatataattttcata |
100 |
Q |
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| T |
41760470 |
tagtaagcctaatgaacaaaatgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaaaatattgaaaatataattttcata |
41760569 |
T |
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| Q |
101 |
gacgaagaacaaggagaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaatcgaagaaaacaaca |
200 |
Q |
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| T |
41760570 |
gacgaagaacaaggagaagaagttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaattgaagaaaacaaca |
41760669 |
T |
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| Q |
201 |
tagaagaagaggagcatgaagaaga |
225 |
Q |
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| T |
41760670 |
tagaagaagaggagcatgaagaaga |
41760694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 41795385 - 41795495
Alignment:
| Q |
115 |
agaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaatcgaagaaaacaacatagaagaagaggag |
214 |
Q |
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| T |
41795385 |
agaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaattgaagaaaacaacatagaagaagaggag |
41795484 |
T |
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| Q |
215 |
catgaagaaga |
225 |
Q |
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| T |
41795485 |
catgaagaaga |
41795495 |
T |
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