View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10726_low_2 (Length: 458)
Name: NF10726_low_2
Description: NF10726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10726_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Original strand, 51861723 - 51862160
Alignment:
| Q |
14 |
cttatcatatagaattgaacaggcaatgcaagctaattgggagccaagatactcaagaagctgccataggatcccatggcaacaatatgcaaaagtcgga |
113 |
Q |
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| T |
51861723 |
cttatcatatagaattgaacaggcaatgcaagctaattgggagccaagatactcaagaagctgccataggatcccatggcaacaatatgcaaaagtcgga |
51861822 |
T |
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| Q |
114 |
acttctcttcgtcattttagttacactgttgtcgcactacatggatgtcttcagtctgaaattcaggtactaaatcatctattttggaaataatttaact |
213 |
Q |
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| T |
51861823 |
acttctcttcgtcattttagttacactgttgtcgcactacatggatgtcttcagtctgaaattcaggtactaaatcatctattttggaaataatttaact |
51861922 |
T |
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| Q |
214 |
nnnnnnngagtagtgtttatatgatgcccaaaagaaactgttctgtaactagaaaagggactagatgtaacagaatagcatatcttagattgagtttcat |
313 |
Q |
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| T |
51861923 |
aaaaaaagagtagtgtttatatgatgcccaaaagaaactgttctgtaactagaaaagggactagatgtaacagaatagcatatcttagattgagtttcat |
51862022 |
T |
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| Q |
314 |
gatgcaaacttatatcagtgatccttttttacaaattaaattaacttaccactatatatggttattatactaactagnnnnnnncacaaaatcaattgct |
413 |
Q |
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| T |
51862023 |
gatgcaaacttatatcagtgatccttttttacaaattaaattaacttaccactatatatggttattatactaactagtttttttcacaaaatcaattgct |
51862122 |
T |
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| Q |
414 |
ttaacatgcttctgtacctatctataaggttcatctca |
451 |
Q |
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| T |
51862123 |
ttaacatgcttctgtacctatctataaggttcatctca |
51862160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 51821875 - 51822045
Alignment:
| Q |
25 |
gaattgaacaggcaatgcaagctaattgggagccaagatactcaagaagctgccataggatcccatggcaacaatatgcaaaagtcggaacttctcttcg |
124 |
Q |
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| T |
51821875 |
gaattaaacaggcattgcaagcaagttgggagccaagatactcaaaatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcg |
51821974 |
T |
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| Q |
125 |
tcattttagttacactgttgtcgcactacatggatgtcttcagtctgaaattcaggtactaaatcatctat |
195 |
Q |
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| T |
51821975 |
ccattttagttacactgttgtagcactacatggatgtttgcagtcagaaattcaggtactaaatcagctat |
51822045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 51851640 - 51851796
Alignment:
| Q |
31 |
aacaggcaatgcaagctaattgggagccaagatactcaagaagctgccataggatcccatggcaacaatatgcaaaagtcggaacttctcttcgtcattt |
130 |
Q |
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||||||| || ||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||| || ||||||| ||||| |
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| T |
51851640 |
aacaggctatacaagcaaattgggagccaagatactcaagatgctgccacaggatcccatggcagcaatatgcaaaagtaggagctgctcttcgccattt |
51851739 |
T |
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| Q |
131 |
tagttacactgttgtcgcactacatggatgtcttcagtctgaaattcaggtactaaa |
187 |
Q |
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| T |
51851740 |
tagttacaccgttgtagcactacatggttgtttgcagtctgaaattcaggtactaaa |
51851796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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