View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10726_low_3 (Length: 409)
Name: NF10726_low_3
Description: NF10726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10726_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 37842543 - 37842869
Alignment:
| Q |
1 |
ggaagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcat |
100 |
Q |
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|||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37842543 |
ggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcat |
37842642 |
T |
|
| Q |
101 |
cattcatgggtaatcctatcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
37842643 |
cattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgtgtctccaaatcaaccgatcacaaaggtat |
37842742 |
T |
|
| Q |
201 |
cagtaatgttcaaattgtgatgattgaaataggatcctctatattgatttctgttgtgctggtaataataattcgaaggcgtttccatagaatggaatca |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
37842743 |
cagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattcaaaggcgtttccttagaaaggaatca |
37842842 |
T |
|
| Q |
301 |
gatacgaaagatctaaagcaatggtat |
327 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
37842843 |
gatacggaagatctaaagcaatggtat |
37842869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 28089418 - 28089685
Alignment:
| Q |
6 |
tcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcattc |
105 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||| || |||| ||| ||||||||||||||||||||||||||| |
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| T |
28089418 |
tcttgtttcattaattgaggtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatgagtttattgaattcctcaccatcatcattc |
28089517 |
T |
|
| Q |
106 |
atgggtaatcctatcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagta |
205 |
Q |
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||||| |||||| |||||||| | ||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||| |||| ||| |
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| T |
28089518 |
atgggcaatcctctcatatgttttagttgttgaa-ttgcattaaaactagttatgtaaatccatgtgtctacaaatcaaccgatcataaagttatcggta |
28089616 |
T |
|
| Q |
206 |
atgttcaaattgtgatgattgaaataggatcctctatattgatttctgttgtgctggtaataataattc |
274 |
Q |
| |
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||||||||||||||||||| ||| | |||||||| ||||||||||||| ||||||||| |||||||||| |
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| T |
28089617 |
atgttcaaattgtgatgatagaacttggatcctcaatattgatttctgatgtgctggtgataataattc |
28089685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 5 - 277
Target Start/End: Original strand, 37836928 - 37837200
Alignment:
| Q |
5 |
gtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcatt |
104 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| ||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
37836928 |
gtcttgtttcattaattgaggtcaatatttctttcaatctcttcaatggatctgtaccaacaggtctaatgaggttattgaattcctcaccatcatcatt |
37837027 |
T |
|
| Q |
105 |
catgggtaatcctatcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagt |
204 |
Q |
| |
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||||||||||||| || ||||||| |||||||| | |||||||| ||||||| |||||||| ||||||||| ||||||||| |||| |||||||||||| |
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| T |
37837028 |
catgggtaatcctttcctatgtgtaagttgtttgaattgcattataactagtaatgtaaatccatgtgtctacaaatcaactgatcataaaggtatcagt |
37837127 |
T |
|
| Q |
205 |
aatgttcaaattgtgatgattgaaataggatcctctatattgatttctgttgtgctggtaataataattcgaa |
277 |
Q |
| |
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||||||||||||| ||||| | | | |||||||| ||||||||||||| |||| |||| |||||| |||||| |
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| T |
37837128 |
tatgttcaaattgtaatgatagtacttggatcctcaatattgatttctgctgtgatggtgataatatttcgaa |
37837200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 37831222 - 37831496
Alignment:
| Q |
3 |
aagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatca |
102 |
Q |
| |
|
|||||||||||| |||| ||| || ||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
37831222 |
aagtcttgtttcgttaactgatatcaatgtttcttacaatctcttcaatggttctgtaccaacaggtctaatgaagttactgaattcctcaccatcatca |
37831321 |
T |
|
| Q |
103 |
ttcatgggtaatcctatcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatca |
202 |
Q |
| |
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|||||||||| |||| || ||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| |
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| T |
37831322 |
ttcatgggtagtcctctcctatgtgttagttgtttgagttgcattgaaactagttatgtaaatccatgtgtctacaagtcaactgatcacaaaggtatcg |
37831421 |
T |
|
| Q |
203 |
gtaatgttcaaattgtgatgattgaaataggatcctctatattgatttctgttgtgctggtaataataattcgaa |
277 |
Q |
| |
|
||||||||||||||||| |||| ||| | |||||||| ||||| ||||||| | || || ||||||| ||||||| |
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| T |
37831422 |
gtaatgttcaaattgtgttgatagaacttggatcctcaatatttatttctgctctgatgctaataatgattcgaa |
37831496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 37850307 - 37850428
Alignment:
| Q |
5 |
gtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcatt |
104 |
Q |
| |
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|||||||||||||||||||| | |||||||||| |||||||||| |||||||| |||||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
37850307 |
gtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattgaattcctcaccatcatcatt |
37850406 |
T |
|
| Q |
105 |
catgggtaatcctatcatatgt |
126 |
Q |
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| T |
37850407 |
catgggtaatcctctcctatgt |
37850428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 36865675 - 36865944
Alignment:
| Q |
5 |
gtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcatt |
104 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||| |||||||||||| |||||||| ||||| | | |||||||||||||||||| ||||| || |
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| T |
36865675 |
gtcttgtttcattaattgaggtcaatatttattacaatcttttcaatggttctgtaccaacacgtctaattaggttattgaattcctcaccgtcatcgtt |
36865774 |
T |
|
| Q |
105 |
catgggtaatcctatcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagt |
204 |
Q |
| |
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||||||||||||| || ||||||| || ||||| | |||| |||||||||||| | ||||| ||||| ||| |||| |||| ||||||||||||||| | |
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| T |
36865775 |
catgggtaatcctctcctatgtgttagatgtttgaattgctttaaaactagttttataaatccatgtatctacaaaccaactgatcacaaaggtatcatt |
36865874 |
T |
|
| Q |
205 |
aatgttcaaattgtgatgattgaaataggatcctctatattgatttctgttgtgctggtaataataattc |
274 |
Q |
| |
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|||||||||||||||||||| ||| | ||| |||| ||||| |||||| |||| ||| |||||||||| |
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| T |
36865875 |
aatgttcaaattgtgatgatagaacttggaccctcaatatttgtttctggtgtggcggtgataataattc |
36865944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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