View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10726_low_4 (Length: 385)
Name: NF10726_low_4
Description: NF10726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10726_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 37842567 - 37842869
Alignment:
| Q |
1 |
gtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37842567 |
gtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatat |
37842666 |
T |
|
| Q |
101 |
gtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagtaatgttcaaattgtgatgat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37842667 |
gtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgtgtctccaaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgat |
37842766 |
T |
|
| Q |
201 |
tgaaataggatcctctatattgatttctgttgtgctggtaataataattcgaaggcgtttccatagaatggaatcagatacgaaagatctaaagcaatgg |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
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| T |
37842767 |
tgaaattggatcctctatattgatttctgttgtgctggtaataataattcaaaggcgtttccttagaaaggaatcagatacggaagatctaaagcaatgg |
37842866 |
T |
|
| Q |
301 |
tat |
303 |
Q |
| |
|
||| |
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|
| T |
37842867 |
tat |
37842869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 37831245 - 37831496
Alignment:
| Q |
2 |
tcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatatg |
101 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||| |
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| T |
37831245 |
tcaatgtttcttacaatctcttcaatggttctgtaccaacaggtctaatgaagttactgaattcctcaccatcatcattcatgggtagtcctctcctatg |
37831344 |
T |
|
| Q |
102 |
tgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagtaatgttcaaattgtgatgatt |
201 |
Q |
| |
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||| |||||||| ||||||||| ||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
37831345 |
tgttagttgtttgagttgcattgaaactagttatgtaaatccatgtgtctacaagtcaactgatcacaaaggtatcggtaatgttcaaattgtgttgata |
37831444 |
T |
|
| Q |
202 |
gaaataggatcctctatattgatttctgttgtgctggtaataataattcgaa |
253 |
Q |
| |
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||| | |||||||| ||||| ||||||| | || || ||||||| ||||||| |
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| T |
37831445 |
gaacttggatcctcaatatttatttctgctctgatgctaataatgattcgaa |
37831496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 28089437 - 28089685
Alignment:
| Q |
1 |
gtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
28089437 |
gtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatgagtttattgaattcctcaccatcatcattcatgggcaatcctctcatat |
28089536 |
T |
|
| Q |
101 |
gtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagtaatgttcaaattgtgatgat |
200 |
Q |
| |
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|| | ||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||| |||| |||||||||||||||||||||| |
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| T |
28089537 |
gttttagttgttgaa-ttgcattaaaactagttatgtaaatccatgtgtctacaaatcaaccgatcataaagttatcggtaatgttcaaattgtgatgat |
28089635 |
T |
|
| Q |
201 |
tgaaataggatcctctatattgatttctgttgtgctggtaataataattc |
250 |
Q |
| |
|
||| | |||||||| ||||||||||||| ||||||||| |||||||||| |
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|
| T |
28089636 |
agaacttggatcctcaatattgatttctgatgtgctggtgataataattc |
28089685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 37836948 - 37837200
Alignment:
| Q |
1 |
gtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
37836948 |
gtcaatatttctttcaatctcttcaatggatctgtaccaacaggtctaatgaggttattgaattcctcaccatcatcattcatgggtaatcctttcctat |
37837047 |
T |
|
| Q |
101 |
gtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagtaatgttcaaattgtgatgat |
200 |
Q |
| |
|
|||| |||||||| | |||||||| ||||||| |||||||| ||||||||| ||||||||| |||| |||||||||||| ||||||||||||| ||||| |
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| T |
37837048 |
gtgtaagttgtttgaattgcattataactagtaatgtaaatccatgtgtctacaaatcaactgatcataaaggtatcagttatgttcaaattgtaatgat |
37837147 |
T |
|
| Q |
201 |
tgaaataggatcctctatattgatttctgttgtgctggtaataataattcgaa |
253 |
Q |
| |
|
| | | |||||||| ||||||||||||| |||| |||| |||||| |||||| |
|
|
| T |
37837148 |
agtacttggatcctcaatattgatttctgctgtgatggtgataatatttcgaa |
37837200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 37850327 - 37850428
Alignment:
| Q |
1 |
gtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatat |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
37850327 |
gtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctat |
37850426 |
T |
|
| Q |
101 |
gt |
102 |
Q |
| |
|
|| |
|
|
| T |
37850427 |
gt |
37850428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 36865695 - 36865944
Alignment:
| Q |
1 |
gtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatat |
100 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||| ||||||||||||||| || ||| |
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|
| T |
36865695 |
gtcaatatttattacaatcttttcaatggttctgtaccaacacgtctaattaggttattgaattcctcaccgtcatcgttcatgggtaatcctctcctat |
36865794 |
T |
|
| Q |
101 |
gtgtcagttgtttaagttgcattaaaactagttatgtaaattcatgtgtctccaaatcaaccaatcacaaaggtatcagtaatgttcaaattgtgatgat |
200 |
Q |
| |
|
|||| || ||||| | |||| |||||||||||| | ||||| ||||| ||| |||| |||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36865795 |
gtgttagatgtttgaattgctttaaaactagttttataaatccatgtatctacaaaccaactgatcacaaaggtatcattaatgttcaaattgtgatgat |
36865894 |
T |
|
| Q |
201 |
tgaaataggatcctctatattgatttctgttgtgctggtaataataattc |
250 |
Q |
| |
|
||| | ||| |||| ||||| |||||| |||| ||| |||||||||| |
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|
| T |
36865895 |
agaacttggaccctcaatatttgtttctggtgtggcggtgataataattc |
36865944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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