View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10726_low_5 (Length: 293)

Name: NF10726_low_5
Description: NF10726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10726_low_5
NF10726_low_5
[»] chr1 (2 HSPs)
chr1 (1-276)||(51119384-51119663)
chr1 (96-186)||(25590744-25590835)
[»] chr3 (2 HSPs)
chr3 (36-274)||(1663250-1663498)
chr3 (84-162)||(51810551-51810630)
[»] chr4 (8 HSPs)
chr4 (80-273)||(28964726-28964917)
chr4 (95-207)||(7043335-7043448)
chr4 (81-186)||(11494107-11494213)
chr4 (81-186)||(9881272-9881378)
chr4 (81-163)||(32347602-32347683)
chr4 (95-163)||(26905394-26905461)
chr4 (100-187)||(25170244-25170330)
chr4 (97-163)||(24520783-24520848)
[»] chr2 (3 HSPs)
chr2 (35-169)||(12635115-12635250)
chr2 (95-186)||(40498002-40498092)
chr2 (78-167)||(6962116-6962206)
[»] chr6 (1 HSPs)
chr6 (95-186)||(29010837-29010928)
[»] chr8 (1 HSPs)
chr8 (70-186)||(26794267-26794384)
[»] chr5 (2 HSPs)
chr5 (35-93)||(40905516-40905574)
chr5 (147-186)||(14234156-14234195)
[»] chr7 (1 HSPs)
chr7 (34-163)||(8265811-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (95-186)||(59489-59579)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 51119384 - 51119663
Alignment:
Q  1 acagaaagacatgaagaagtgttgttgaagagagtgttaagatttaatccataactcccatgtaacaaattagttagaattttgttacaaaacgtgtta- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  51119384 acagaaagacatgaagaagtgttgttgaagagagtgttaagatttaattcataactcccatgtaacaagttagttagaattttgttacaaaacgtgttag 51119483  T
Q  100 ---gttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagattaacaattaca 196  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119484 ttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagattaacaattaca 51119583  T
Q  197 agtaaactctccattctctattctctcagttttacaagtttgtttgttattttctcatcttgcttgaaacagcttattat 276  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119584 agtaaactcttcattctctattctctcagttttacaagtttgtttgttattttctcatcttgcttgaaacagcttattat 51119663  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 25590835 - 25590744
Alignment:
Q  96 gttagttagttagatagcttgtgctacaagtaagtgttatatttgcatata-aaaggctttgtaatgtgtacatttaattcttaatgagatt 186  Q
    |||||||||| |||||| || || |||||| ||||||||  ||||| |||| ||||||||||||| ||||||||| | ||||||||||||||    
T  25590835 gttagttagtgagataggttatgttacaagcaagtgttagttttgcttatataaaggctttgtaacgtgtacattcacttcttaatgagatt 25590744  T

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Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 36 - 274
Target Start/End: Original strand, 1663250 - 1663498
Alignment:
Q  36 gttaagatttaatccataactcccatgtaacaaattagttagaattttgttacaaaacgtgttagtta--------gttagatagcttgtgctacaagta 127  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| | |||||||        |||||||||||||||||||||  |    
T  1663250 gttaagatttaatccataactgccatgtagcaagttagttagaattttgttacaaaacttcttagttagtttgttagttagatagcttgtgctacaaaca 1663349  T
Q  128 agtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagattaacaattacaagtaaa--ctctccattctctattctctcag 225  Q
    |||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||||||| ||||||||||| |||  |||||||||||||  ||| ||||    
T  1663350 agtgttatatttgcctatgaaagtctttgtaaggtgtacattcaattcttaatgagattcacaattacaagcaaactctctccattctcttctctgtcag 1663449  T
Q  226 ttttacaagtttgtttgttattttctcatcttgcttgaaacagcttatt 274  Q
    | |||||||||||||||||||||||||||||||||| || |||||||||    
T  1663450 tcttacaagtttgtttgttattttctcatcttgcttaaaccagcttatt 1663498  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 51810551 - 51810630
Alignment:
Q  84 gttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatata-aaaggctttgtaatgt 162  Q
    ||||||||||  |||| | ||| ||||||||||||||||||| || |||||  ||||| |||| ||||||||||||||||    
T  51810551 gttacaaaactagttaatcagtgagatagcttgtgctacaagcaaatgttagttttgcctatataaaggctttgtaatgt 51810630  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 80 - 273
Target Start/End: Complemental strand, 28964917 - 28964726
Alignment:
Q  80 ttttgttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaa 179  Q
    |||| ||||||||  |||| |||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||| |||| |||||||||    
T  28964917 ttttcttacaaaatttgtttgttagttagatagcttgtactacaagcaagtgttgtatttgcttataaaaggctttgtaatgtgtgcattcaattcttaa 28964818  T
Q  180 tgagattaacaattacaagtaaa--ctctccattctctattctctcagttttacaagtttgtttgttattttctcatcttgcttgaaacagcttat 273  Q
    ||||||| ||||||||||| |||  |||||||||||||  ||||||||||||||||    |||||||| ||||||||||| ||| |||||||||||    
T  28964817 tgagattcacaattacaagcaaactctctccattctcttctctctcagttttacaa----gtttgttaatttctcatcttacttaaaacagcttat 28964726  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 7043448 - 7043335
Alignment:
Q  95 tgttagttagttagatagcttgtgctacaagtaagtgt--tatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagattaacaat 192  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||| | | ||||||||||| ||||||||||||||| |   |||||||||||| |  ||    
T  7043448 tgttagttagttagatagcttgtgctacaagcaagtgtgatatatatacctataaaaggctatgtaatgtgtacattcacaacttaatgagattca-tat 7043350  T
Q  193 tacaagtaaactctc 207  Q
    |||||| ||||||||    
T  7043349 tacaagcaaactctc 7043335  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 11494107 - 11494213
Alignment:
Q  81 tttgttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaa-aggctttgtaatgtgtacatttaattcttaa 179  Q
    |||||||||||||  ||||||| || |||||| |||||||||||| |||| |||  ||||| |||| | ||||||||||||||||||||| | |||||||    
T  11494107 tttgttacaaaactagttagtttgtgagatagtttgtgctacaagcaagtattagttttgcctatatataggctttgtaatgtgtacattcacttcttaa 11494206  T
Q  180 tgagatt 186  Q
    |||||||    
T  11494207 tgagatt 11494213  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 9881272 - 9881378
Alignment:
Q  81 tttgttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaa-ggctttgtaatgtgtacatttaattcttaa 179  Q
    |||||||||||||  ||||||||   || |||||||| ||||||| ||||||||  ||||| |||| || |||||||||||||||||||| | | |||||    
T  9881272 tttgttacaaaactagttagttatggagttagcttgttctacaagaaagtgttagttttgcctatataacggctttgtaatgtgtacattcactacttaa 9881371  T
Q  180 tgagatt 186  Q
    |||||||    
T  9881372 tgagatt 9881378  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 32347683 - 32347602
Alignment:
Q  81 tttgttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtg 163  Q
    |||||| |||||  ||||||||||||||||||||||| ||||||| ||||| ||| | ||| |||||||||||||||| ||||    
T  32347683 tttgtttcaaaatttgttagttagttagatagcttgttctacaagcaagtgatat-tgtgcctataaaaggctttgtattgtg 32347602  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 26905394 - 26905461
Alignment:
Q  95 tgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtg 163  Q
    ||||||||||||||||||||||| ||| ||| ||||| ||| | ||| |||||||||||||||| ||||    
T  26905394 tgttagttagttagatagcttgttctaaaagcaagtgctat-tatgcctataaaaggctttgtattgtg 26905461  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 25170244 - 25170330
Alignment:
Q  100 gttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagatta 187  Q
    ||||||||||||| |||| ||||||| ||||| ||| | ||| |||||||||||||||| |||| |  || || ||||||||||||||    
T  25170244 gttagttagatagattgttctacaagcaagtgatat-tgtgcctataaaaggctttgtattgtgaaacttcaagtcttaatgagatta 25170330  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 24520848 - 24520783
Alignment:
Q  97 ttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtg 163  Q
    ||||||||||||| ||||||| ||||||| ||||| ||| | ||| |||||||||||||||| ||||    
T  24520848 ttagttagttagacagcttgttctacaagcaagtgatat-tgtgcctataaaaggctttgtattgtg 24520783  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 12635115 - 12635250
Alignment:
Q  35 tgttaagatttaatccataactcccatgtaacaaattagttagaattttgtt-acaaaacgtgttagttagttagatagcttgtgctacaagtaagtgtt 133  Q
    |||||||| ||||| ||||||| |||  || ||| || ||||||||||| || ||||||| ||||||||||| ||||| ||| ||||||||| |||||||    
T  12635115 tgttaagagttaatacataactgccacatagcaagttggttagaattttttttacaaaacttgttagttagtgagataacttatgctacaagcaagtgtt 12635214  T
Q  134 atatttgcatataaaaggctttgtaatgtgtacatt 169  Q
    |||||| | |||||||||||||||||||||||||||    
T  12635215 atattttcctataaaaggctttgtaatgtgtacatt 12635250  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 40498002 - 40498092
Alignment:
Q  95 tgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagatt 186  Q
    |||||||| ||||||| |||||| ||||  | ||||| ||| | |||||||||||||||||||| |||| |  |||||||||||||||||||    
T  40498002 tgttagtttgttagattgcttgttctaccggcaagtgctat-tgtgcatataaaaggctttgtattgtgcaactttaattcttaatgagatt 40498092  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 6962116 - 6962206
Alignment:
Q  78 aattttgttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatata-aaaggctttgtaatgtgtaca 167  Q
    ||||||||||||||||  |||||||||  ||  | ||||| ||||||| ||||||||  ||||| |||| |||||||||||||||||||||    
T  6962116 aattttgttacaaaactagttagttaggaagtcatcttgttctacaagcaagtgttaattttgcctatataaaggctttgtaatgtgtaca 6962206  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 29010928 - 29010837
Alignment:
Q  95 tgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagatt 186  Q
    ||||||||||| ||||||||||||||||||| |||  | |||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  29010928 tgttagttagtgagatagcttgtgctacaagcaagcatcatatttgcctataaaaggctttgtaatgtgtacattcacttcttaatgagatt 29010837  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 26794384 - 26794267
Alignment:
Q  70 ttagttagaattttgttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatata-aaaggctttgtaatgtgtacat 168  Q
    |||||||  |||||||||||||||  |||||||||  || |||||||| ||||||| ||||||||  ||||| |||| ||||||||||||||||||||||    
T  26794384 ttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaaggctttgtaatgtgtacat 26794285  T
Q  169 ttaattcttaatgagatt 186  Q
    | | ||||||||||||||    
T  26794284 tcacttcttaatgagatt 26794267  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 40905516 - 40905574
Alignment:
Q  35 tgttaagatttaatccataactcccatgtaacaaattagttagaattttgttacaaaac 93  Q
    ||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||    
T  40905516 tgttaagatttaatctataactgccatgtagcaagttagttagaattttgttacaaaac 40905574  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 14234156 - 14234195
Alignment:
Q  147 aaaggctttgtaatgtgtacatttaattcttaatgagatt 186  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  14234156 aaaggctttgtaatgtgtacattcacttcttaatgagatt 14234195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 8265811 - 8265942
Alignment:
Q  34 gtgttaagatttaatccataactcccatgtaa-caaattagttagaattttgttacaaaacgtgttagttagttagatagcttgtgctacaagtaagtgt 132  Q
    ||||||||| ||||| ||||||| |||  ||| ||| ||||||   ||||||||| |||||  |||||||||  || |||||||| ||||||| ||||||    
T  8265811 gtgttaagaattaattcataactgccacctaagcaagttagttgagattttgttagaaaactagttagttaggaagttagcttgttctacaagaaagtgt 8265910  T
Q  133 tatatttgcatata-aaaggctttgtaatgtg 163  Q
    ||  ||||| |||| |||||||||||||||||    
T  8265911 tagttttgcctatataaaggctttgtaatgtg 8265942  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 59579 - 59489
Alignment:
Q  95 tgttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagatt 186  Q
    ||||||||||||| ||||||||| ||||||| |||||  || | ||| |||||||||||||||| |||| |  || || |||||||||||||    
T  59579 tgttagttagttaaatagcttgttctacaagcaagtgccat-tgtgcctataaaaggctttgtattgtgcaacttcaagtcttaatgagatt 59489  T

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