View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10726_low_6 (Length: 276)
Name: NF10726_low_6
Description: NF10726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10726_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 3021082 - 3021318
Alignment:
| Q |
20 |
atcatgtggtgaacttcagtgctggctaagaattttttgtgccaaattagttgttttatctttaaaaatatttactacttaagagttaagaccaaacttc |
119 |
Q |
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| T |
3021082 |
atcatgtggtgaacttcagtgctggctaagaattttttgtgccaaattagttgttttatctttaaaaatatttactacttaagagttaagaccaaacttc |
3021181 |
T |
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| Q |
120 |
atatatgtatgtttatatagatattgccaaaagtcttttcttgactattctaaaaggtaagttgc-tatgcaattcatctggataatatttttaattaca |
218 |
Q |
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| T |
3021182 |
atat-tgtatgtttatacagatattgccaaaagtcttttcttgactattctaaaaggtaagttgcatatg--------ctggataata-ttttaattaca |
3021271 |
T |
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| Q |
219 |
tctgaaaaatgcaaaccaaacctacaaaaaccgaaccaaaattgccc |
265 |
Q |
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| T |
3021272 |
tctgaaaaatgcaaaccgaacctacaaaaactgaactaaaattgccc |
3021318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 3017997 - 3018154
Alignment:
| Q |
46 |
taagaattttttgtgccaaattagttgttttatctttaaaaatatttactacttaagagttaagaccaaacttcatatatgtatgtttat--atagatat |
143 |
Q |
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| T |
3017997 |
taagaattttttgtgccaaattagttgttt-atctttaaaaatattttcta-------gttaagaccaaacttcatatatgtatgtttgtttatagatat |
3018088 |
T |
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| Q |
144 |
tgccaaaagtcttttcttgactattctaaaaggtaagttgc-tatgcaattcatctggataatatt |
208 |
Q |
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| T |
3018089 |
tgccaaatttctttgcttgattattctaaaaggtaagtttcatatgcaattcatctagataatatt |
3018154 |
T |
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