View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_high_12 (Length: 270)
Name: NF10727_high_12
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 43908249 - 43908499
Alignment:
| Q |
5 |
gagaagcagagagtggggtgttgtttccaccttgccagatagcttcaggtactttcattttgagaacagcaacgagggacgtaggaacactcataatgtg |
104 |
Q |
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| T |
43908249 |
gagaggcagagagtggggtgttgtttccaccttgccagatagcttcaggtactttcattttgagaacagcaacgagggaagtaggaacactcataatgtg |
43908348 |
T |
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| Q |
105 |
tgcaagttccaaaatggcaagcctcgcttcactttgaggctttaccacagcaacttttccattttccattattgtttactaatttgtttttatactcaaa |
204 |
Q |
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| T |
43908349 |
tgcaagttccaaaatggcaagcctcgcttcactttgagactttaccacagcaacttttccattttccattattgtttactaatttgtttttatactcaaa |
43908448 |
T |
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| Q |
205 |
actaaaaaagattgttgtgttttcagctggtgtagtagtagaagaaagtac |
255 |
Q |
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| T |
43908449 |
actaaaaaagattgttgtgttttcagctggtgtagtagtagaagaaagtac |
43908499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 43896593 - 43896839
Alignment:
| Q |
5 |
gagaagcagagagtggggtgttgtttccaccttgccagatagcttcaggtactttcattttgagaacagcaacgagggacgtaggaacactcataatgtg |
104 |
Q |
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|||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43896593 |
gagaggcagagagtggagtgttctttccaccttgccagatggcttcaggtactttcattttgagaacagcattaagggacgtaggaacactcataatgtg |
43896692 |
T |
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| Q |
105 |
tgcaagttccaaaatggcaagcctcgcttcactttgaggctttaccacagcaacttttccattttccattattgtttactaatttgtttttatactcaaa |
204 |
Q |
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| T |
43896693 |
tgcaagttccaaaatggcaagcctcgcttcactttgaggctttaccacagcaacttttccattttccattattgtttactaatttgtttttatactcaaa |
43896792 |
T |
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| Q |
205 |
actaaaaaagattgttgtgttttcagctggtgtagtagtagaagaaa |
251 |
Q |
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| T |
43896793 |
actaaaaaagattgttgtgttttcagcaggtgtagtagtagaagaaa |
43896839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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