View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_high_14 (Length: 253)
Name: NF10727_high_14
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 178492 - 178706
Alignment:
| Q |
35 |
attttaaaataaaattattgtatgactatgaaaccgattttcatatgaccaaatttattgatctgacctaaaatctcatattttcactcttaaaaatatt |
134 |
Q |
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| T |
178492 |
attttaaaataaaattattgtatgaccatgaaaccgattttcatatgaccaaatttattgatctgacctaaaatctcatattttcactcttaaaaatatt |
178591 |
T |
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| Q |
135 |
tattacttaatattagacatttcaactattatgatggaagtcttaaaggattggaggggtagcacttgggtgacattaaccaaccacaatgttatatgtg |
234 |
Q |
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| T |
178592 |
tattacttaatattagacatttcaactagtatgatggaagtcttaaaggattggaggggtaacacttgggtgacattgatcaaccacaatgtcacatgtg |
178691 |
T |
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| Q |
235 |
gctttcttctctctc |
249 |
Q |
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| T |
178692 |
gctttcttctctctc |
178706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 9712996 - 9712940
Alignment:
| Q |
191 |
gggtagcacttgggtgacattaaccaaccacaatgttatatgtggctttcttctctc |
247 |
Q |
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| T |
9712996 |
gggtagcacttgggtgacattgaccaaccacaatgtcacaagtggctttcttctctc |
9712940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 6607539 - 6607486
Alignment:
| Q |
191 |
gggtagcacttgggtgacattaaccaaccacaatgttatatgtggctttcttct |
244 |
Q |
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| T |
6607539 |
gggtagcacttgggtgacattgaccaaccataatgtcacatgtggctttcttct |
6607486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 43465102 - 43465153
Alignment:
| Q |
193 |
gtagcacttgggtgacattaaccaaccacaatgttatatgtggctttcttct |
244 |
Q |
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| T |
43465102 |
gtagcacttgggtgacattggccaaccacaatatcacatgtggctttcttct |
43465153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 6980988 - 6980943
Alignment:
| Q |
204 |
gtgacattaaccaaccacaatgttatatgtggctttcttctctctc |
249 |
Q |
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| T |
6980988 |
gtgacattggccaaccacaatgttacaagtggctttcttctctctc |
6980943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 43303803 - 43303835
Alignment:
| Q |
194 |
tagcacttgggtgacattaaccaaccacaatgt |
226 |
Q |
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| T |
43303803 |
tagcacttgggtgacattgaccaaccacaatgt |
43303835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 28809974 - 28810022
Alignment:
| Q |
191 |
gggtagcacttgggtgacattaaccaaccacaatgttatatgtggcttt |
239 |
Q |
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| T |
28809974 |
gggtagcatttgggtgacattgactaaccacaatgttacaagtggcttt |
28810022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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