View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_high_19 (Length: 241)
Name: NF10727_high_19
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 36813027 - 36813246
Alignment:
| Q |
22 |
ccaccgttgactagtaattaaaatcaatcagaaatttcaacgacgatcgactatattatttagaaataaaaactcaagacttttttcatacttacaacta |
121 |
Q |
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| T |
36813027 |
ccaccgttgactagtaattaaaatcaatcagaaatttcaacgacgatcgactatattatttagaaataaaaactcaagatttttttcatacttacaacta |
36813126 |
T |
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| Q |
122 |
agatactgagtgtatcgttgtcttgttgagatgaatactgttagctagatctgattgaacgacaatgatcgatgacatggagtcgtggaaaaatattcaa |
221 |
Q |
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| T |
36813127 |
agatagtgagtgtatcgttgtcttgttgagatgaatactgttagctagatctgattgaacgacaatgatcgatgacatggagtcgtggaaaaatattcaa |
36813226 |
T |
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| Q |
222 |
cgacaggtttctcgggttat |
241 |
Q |
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| T |
36813227 |
cgacaggtttctcgggttat |
36813246 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 7107014 - 7107085
Alignment:
| Q |
53 |
aaatttcaacgacgatcgactatattatttagaaataaaaactcaagacttttttcatacttacaactaaga |
124 |
Q |
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||||||||||||||| | || |||||||| |||||||| ||| | ||| ||| |||||||||||||||||| |
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| T |
7107014 |
aaatttcaacgacgaccaacgatattattcagaaataatgacttatgacatttctcatacttacaactaaga |
7107085 |
T |
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