View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_high_5 (Length: 359)
Name: NF10727_high_5
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 39370519 - 39370763
Alignment:
| Q |
1 |
ccatatttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtct |
100 |
Q |
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| T |
39370519 |
ccatatttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtct |
39370618 |
T |
|
| Q |
101 |
tctcctatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370619 |
tctcctatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttc |
39370718 |
T |
|
| Q |
201 |
cttgcccacctttagttactagtgcattataaaccatatccatca |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370719 |
cttgcccacctttagttactagtgcattataaaccatatccatca |
39370763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 34263626 - 34263699
Alignment:
| Q |
150 |
tcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
223 |
Q |
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|||||| | ||||||||||||||||| |||||||||||||||||||||||| ||| || | ||||||||||||| |
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| T |
34263626 |
tcatatctcttggttgaaatcttctatcatgttgatcaccataattctttcattgtccgcatttagttactagt |
34263699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 24528764 - 24528698
Alignment:
| Q |
157 |
ttttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
223 |
Q |
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| T |
24528764 |
tttttgttgaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttactagt |
24528698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 2354087 - 2354024
Alignment:
| Q |
160 |
tggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
223 |
Q |
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||||||||||||| | |||| |||||||||||| || ||||||| || ||| |||||||||||| |
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| T |
2354087 |
tggttgaaatcttatgccatattgatcaccatatttatttccttaccaaccgttagttactagt |
2354024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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