View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_high_7 (Length: 333)
Name: NF10727_high_7
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 27147582 - 27147263
Alignment:
| Q |
18 |
cataacacctttgaagttttagatttagacactgcgcagggcatagtggattctacaacaaatgataaggca--------------aatggatacgcaaa |
103 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||| |
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| T |
27147582 |
cataacacctttgacgttttagatttagacactgcgcagggcatagtggattctacaacaaatgataaggaatctaatcccactgaactggatatgcaaa |
27147483 |
T |
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| Q |
104 |
tggataaaaatccaagtgtggaggaatcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggca-aatcttcaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
27147482 |
tggataaaaatccaagtgtggaggaatcttgtttcttgatgagcctctgatgcattttacatctattccttcttggtcttggaagaggcttaatcttcac |
27147383 |
T |
|
| Q |
203 |
cttagcaaaaattgacaagcactctcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattaggga |
302 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27147382 |
cctagcaaaaattgacaggcactctcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattaggga |
27147283 |
T |
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| Q |
303 |
tgccatttactagatttcat |
322 |
Q |
| |
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|||||||||||||||||||| |
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| T |
27147282 |
tgccatttactagatttcat |
27147263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 36769683 - 36769719
Alignment:
| Q |
92 |
tggatacgcaaatggataaaaatccaagtgtggagga |
128 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |
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| T |
36769683 |
tggatatgcaaatggataaaaatccaaatgtggagga |
36769719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 9383011 - 9383205
Alignment:
| Q |
129 |
atcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggca-aatcttcaacttagcaaaaattg-acaagcactc |
226 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||| |||||| || ||| | |||| |
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| T |
9383011 |
atcttgtttcttgatgagcctctgatgcattttacatctattccttcttggtattggaagaggcttaatcttcaccttaacaaaaaatggacagggactc |
9383110 |
T |
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| Q |
227 |
tcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcat |
322 |
Q |
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| T |
9383111 |
tcttggcattc-actcaatggtggccatctgcacctaatttcctccttaattttctctctagagatagattagggatgccatttactagatttcat |
9383205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 30731516 - 30731710
Alignment:
| Q |
129 |
atcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggca-aatcttcaacttagcaaaaattg-acaagcactc |
226 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| || | |||||||||||||||||| |||||||| |||||||||||||| ||| | |||| |
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| T |
30731516 |
atcttgtttcttgatgagcctctgatgcattttacatctattcatgcttggtattggaagaggcttaatcttcaccttagcaaaaattggacagggactc |
30731615 |
T |
|
| Q |
227 |
tcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcat |
322 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30731616 |
tcttggcattccactcaatggtggccatctgcac-tactttcttccttaattttctctctagagatagattagggatgccatttactagatttcat |
30731710 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 15484295 - 15484106
Alignment:
| Q |
129 |
atcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggc-aaatcttcaacttagcaaaaattgacaagcactct |
227 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||| || |
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| T |
15484295 |
atcttgtttcttgatgagcctctgatgcattttacatctattccttcttggtattggaagaggcttaatcttcaccttagcaaaaaatggacagcaaact |
15484196 |
T |
|
| Q |
228 |
cttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcat |
322 |
Q |
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| || || ||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15484195 |
tt----atccctaaaaatggtggccatctgca-ctactttcttccttaattttctctctagagatagattagggatgccatttactagatttcat |
15484106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 15485071 - 15485005
Alignment:
| Q |
21 |
aacacctttgaagttttagatttagacactgcgcagggcatagtggattctacaacaaatgataagg |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |
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| T |
15485071 |
aacacctttgaagttttagatttagacactacacagggcatagtggatgctacaacaaatgataagg |
15485005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 15484986 - 15484949
Alignment:
| Q |
92 |
tggatacgcaaatggataaaaatccaagtgtggaggaa |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
15484986 |
tggatatgcaaatggataaaaatccaagtgtggaggaa |
15484949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 44301962 - 44301863
Alignment:
| Q |
223 |
actctcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcat |
322 |
Q |
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|||||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44301962 |
actctcttggcattccactcaacggtggccatctgcacatactttcctccttaattttctctctagagatagattagggatgccatttactagatttcat |
44301863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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