View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10727_high_9 (Length: 301)
Name: NF10727_high_9
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 175 - 296
Target Start/End: Original strand, 49162991 - 49163112
Alignment:
| Q |
175 |
aagaagctataaagctaatgaggtcacgtgacaacaacttttctgttgcatcgaagctccccacataagctataaagctgaaaattgaccttaacaaaat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49162991 |
aagaagctataaagctaatgaggtcacgtgacaacaacttttctgttgcatcgaagcttcccacataagctataaagctgaaaattgaccttaacaaaat |
49163090 |
T |
|
| Q |
275 |
gagtcataatcccgcaccccct |
296 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
49163091 |
gagtcataatcccgcaccccct |
49163112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 49162833 - 49162964
Alignment:
| Q |
18 |
atgagctcgtcagaaaaaattgttattaaataggtctaatttgatcataggagctcataagctatt--nnnnnnnnncagtttggtgcattaaagctcac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
49162833 |
atgagctcgtcagaaaaaattgttattaaataagtctaatttgatcataggagcttataagctattaaaaaaaaaaacagttcggtgcattaaagctcac |
49162932 |
T |
|
| Q |
116 |
aaatatgtaggaaagttgacctcataagctat |
147 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| |
|
|
| T |
49162933 |
acatacgtaggaaagttgacctcataagctat |
49162964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 48795228 - 48795347
Alignment:
| Q |
175 |
aagaagctataaagctaatgaggtcacgtgacaacaacttttctgttgcatcgaagctccccacataagctataaagctgaaaattgaccttaacaaaat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48795228 |
aagaagctataaagctaatgaggtcacgtgacaacaacttttctattgcatcgaagcttcccacataagctataaagctgaaaattgaccttaacaaaat |
48795327 |
T |
|
| Q |
275 |
gagtcataatcccgcacccc |
294 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48795328 |
gagtcataatcccgcacccc |
48795347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 48795072 - 48795200
Alignment:
| Q |
18 |
atgagctcgtcagaaaaaattgttattaaataggtctaatttgatcataggagctcataagctatt---nnnnnnnnncagtttggtgcattaaagctca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
48795072 |
atgagctcgtcagaaaaaattgttattaaataagtctaatttgatcataggagctcataagctattaaaaaaaaaaaacagttcggtgcattaaagctca |
48795171 |
T |
|
| Q |
115 |
caaatatgtaggaaagttgacctcataag |
143 |
Q |
| |
|
|| ||| |||||||||||||||||||||| |
|
|
| T |
48795172 |
cacatacgtaggaaagttgacctcataag |
48795200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 52513395 - 52513277
Alignment:
| Q |
178 |
aagctataaagctaatgaggtcacgtgacaacaacttttctgttgcatcgaagctccccacataagctataaagctgaaaattgaccttaacaaaatgag |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
52513395 |
aagctataaagctaatgaggtcacgtgacaacaacttttctgttgcatcaaagctccccacataagttataaagttgaaaattgaccttaacaaaatgag |
52513296 |
T |
|
| Q |
278 |
tcataatcccgcaccccct |
296 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
52513295 |
gcataatcccgcaccccct |
52513277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 52513551 - 52513422
Alignment:
| Q |
18 |
atgagctcgtcagaaaaaattgttattaaataggtctaatttgatcataggagctcataagctatt--nnnnnnnnncagtttggtgcattaaagctcac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
52513551 |
atgagctcgtcagaaaaaattgttattaaataggtctaatttgataataggaactcataagctattaaaaaaaaaatcaatttggtgcattaaagctcac |
52513452 |
T |
|
| Q |
116 |
aaatatgtaggaaagttgacctcataagctat |
147 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
52513451 |
--atacgtaggaaagttgacctcataagctat |
52513422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 33931918 - 33931963
Alignment:
| Q |
32 |
aaaaattgttattaaataggtctaatttgatcataggagctcataa |
77 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| || ||||||| |
|
|
| T |
33931918 |
aaaaattgttactaaataggtctaatttgaccatatgaactcataa |
33931963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University