View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_low_12 (Length: 296)
Name: NF10727_low_12
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 3002318 - 3002439
Alignment:
| Q |
4 |
accaaataaaaattgcagcaacacaacacctctcatcagctgactaaggctgagcacgccccaacgacaaccagaaaaccaataccctgcacctgcagag |
103 |
Q |
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| T |
3002318 |
accaaataaaaattgcagcaacacaacacctctcatcagctgactaaggctgagcacgccccgacgacaaccagaaaaccaatac------cccgcagag |
3002411 |
T |
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| Q |
104 |
tagaaccagacgtactgaaagtaccaac |
131 |
Q |
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| T |
3002412 |
tagaaccagacctactgaaagtaccaac |
3002439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 3010704 - 3010824
Alignment:
| Q |
4 |
accaaataaaaattgcagcaacacaacacctctcatcagctgactaaggctgagcacgccccaacgacaaccagaaaaccaataccctgcacctgcagag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| || |||||| |
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| T |
3010704 |
accaaataaaaattgcagcaacacaacacctctcatcagcggactaagactgagcacgccccaacgataaccagataaccaatac------cccgcagag |
3010797 |
T |
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| Q |
104 |
tagaaccagacgtactgaaagtaccaa |
130 |
Q |
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| T |
3010798 |
cagaaccagacctactgaaagtaccaa |
3010824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 3002519 - 3002593
Alignment:
| Q |
134 |
tactaacgtacacttccacctcctatacagatcaaaggatacacaatccattggctaattgaataaacaaaccca |
208 |
Q |
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| T |
3002519 |
tactaacctacacttccacctcctatatagatcaaaggatacacaatccattggttaattgaataaacaaaccca |
3002593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 3010842 - 3010892
Alignment:
| Q |
225 |
aaaatggacggtggccgaaatcccaagccattttagagtcttgctccaaac |
275 |
Q |
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| T |
3010842 |
aaaatggagggtggccggaatcccaagccatttcagagtcttgctccaaac |
3010892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 3002590 - 3002618
Alignment:
| Q |
246 |
cccaagccattttagagtcttgctccaaa |
274 |
Q |
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| T |
3002590 |
cccaagccattttagagtcttgctccaaa |
3002618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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