View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_low_15 (Length: 253)
Name: NF10727_low_15
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 36813473 - 36813232
Alignment:
| Q |
12 |
agagagagagaataacttcaattatgcatgcactagctttaagattccaagtgatttcgataatatatggccctagctttaagattaggaaaagaaaggc |
111 |
Q |
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| T |
36813473 |
agagagagagaataacttcaattatgcatgcactagctttaagattccaagtgatttcgataatatatggccctagctttaagattaggaaaagaaaggc |
36813374 |
T |
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| Q |
112 |
accttactatattcacatgtttcaaaaacattagtctctctgttgcacactgatcgtttagacttttaaatggcaaaatgtcaattcatgaacaagctag |
211 |
Q |
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| T |
36813373 |
accttactatattcacatgtttcaaaaacattagtctctttgttgcacactgatcgtttagacttttaaatggcaaaatgtcaattcatgaacaagctag |
36813274 |
T |
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| Q |
212 |
ctcttagtctttaaagcattttcaaaaataacccgagaaacc |
253 |
Q |
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| T |
36813273 |
ctcttagtctttaaagcattttcaaaaataacccgagaaacc |
36813232 |
T |
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