View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10727_low_17 (Length: 252)

Name: NF10727_low_17
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10727_low_17
NF10727_low_17
[»] chr2 (30 HSPs)
chr2 (1-234)||(9328238-9328469)
chr2 (27-234)||(9320645-9320852)
chr2 (23-226)||(9315689-9315881)
chr2 (24-234)||(9061431-9061637)
chr2 (23-226)||(9294920-9295117)
chr2 (23-226)||(9284470-9284667)
chr2 (129-226)||(12012829-12012927)
chr2 (137-216)||(7115959-7116038)
chr2 (129-226)||(11987767-11987865)
chr2 (129-226)||(12006398-12006496)
chr2 (141-225)||(9274277-9274361)
chr2 (119-226)||(9291676-9291784)
chr2 (155-234)||(8573798-8573877)
chr2 (137-226)||(10352882-10352971)
chr2 (23-107)||(12012925-12013009)
chr2 (155-234)||(10347552-10347631)
chr2 (26-107)||(11987863-11987944)
chr2 (23-118)||(10371509-10371604)
chr2 (129-226)||(12019168-12019266)
chr2 (23-123)||(9272317-9272417)
chr2 (157-226)||(10335649-10335718)
chr2 (23-80)||(8573931-8573988)
chr2 (155-226)||(10341140-10341211)
chr2 (155-226)||(9065894-9065962)
chr2 (23-87)||(9364287-9364351)
chr2 (46-90)||(12019282-12019326)
chr2 (23-70)||(9291608-9291655)
chr2 (178-226)||(9364442-9364490)
chr2 (155-196)||(10371625-10371666)
chr2 (23-67)||(9274232-9274276)
[»] scaffold0667 (1 HSPs)
scaffold0667 (23-226)||(4115-4315)
[»] chr3 (1 HSPs)
chr3 (24-226)||(37462141-37462327)
[»] chr1 (5 HSPs)
chr1 (25-118)||(29443680-29443774)
chr1 (23-156)||(29468109-29468248)
chr1 (23-118)||(29453663-29453757)
chr1 (23-91)||(29422983-29423050)
chr1 (196-226)||(29468060-29468090)
[»] chr8 (2 HSPs)
chr8 (186-234)||(41966980-41967028)
chr8 (23-85)||(41967132-41967194)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9328238 - 9328469
Alignment:
Q  1 ttcaaagtaattagagaactattaagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9328238 ttcaaagtaattagagaactattaagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaactt 9328337  T
Q  101 atacatagcaaaaactcaaaaaactcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacaggga 200  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9328338 atacatagcaaaaactcaaaaaactc--ataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacaggga 9328435  T
Q  201 aggaaggtggtacaagacttccaacagaaaacat 234  Q
    ||||||||||||||||||||||||||||||||||    
T  9328436 aggaaggtggtacaagacttccaacagaaaacat 9328469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 9320645 - 9320852
Alignment:
Q  27 aattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaaactc 126  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||     
T  9320645 aattcaatttgacctatagcatagagtttaacttaatatatcatatgatgggtccattgaattgacatcaactaatacatagcaaaaactcaaaaaacta 9320744  T
Q  127 atataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
     ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  9320745 gtataatcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaaca 9320844  T
Q  227 gaaaacat 234  Q
     |||||||    
T  9320845 caaaacat 9320852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 9315689 - 9315881
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||       
T  9315689 taagaattcaatttgacctttagcatagagtttaactacttatatcatatgatgggtccattgaactgacattaacttatacatagcaaaaactcaa--- 9315785  T
Q  123 actcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttcc 222  Q
          |||||  | | ||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |    
T  9315786 ------ataat--atataagtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttc 9315877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 9061637 - 9061431
Alignment:
Q  24 aagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaa---a 120  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| |||||| ||  |||||||| |||||||||||||||||||||||||||||||   |    
T  9061637 aagaattcaatttaacctttagcatagagtttaactacatatattatatgatgg--ccattgaactgacatcaacttatacatagcaaaaactcaaaaaa 9061540  T
Q  121 aaactcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagactt 220  Q
    ||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||   || || |||||||||||||| |||||| ||| ||||||    
T  9061539 aaactcatataatc--aataagtaccttctcttggtcttgcttgtacgattctccttct---tacaagtatcaacagggaagaaaggtgatacgagactt 9061445  T
Q  221 ccaacagaaaacat 234  Q
    |||||| |||||||    
T  9061444 ccaacataaaacat 9061431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 9295117 - 9294920
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||||||||||||||||||||||  |||| || |||||| ||||||||| || | | || |||||||||| ||||||||            
T  9295117 taagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa-------- 9295026  T
Q  123 actcatataatcaa--aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagactt 220  Q
    ||||| ||||||||  |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||    
T  9295025 actcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtgctacgagactt 9294926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 9284667 - 9284470
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||||||||  ||| ||||||||| |||| || |||||| ||||||||| || | | || |||||||||| ||||||||            
T  9284667 taagaattcaatttgacctttaatataaagtttaactacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaa-------- 9284576  T
Q  123 actcatataatcaa--aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagactt 220  Q
    ||||| ||||||||  |||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  9284575 actcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaagactt 9284476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 12012927 - 12012829
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    |||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12012927 ataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaaca 12012829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 7116038 - 7115959
Alignment:
Q  137 aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaag 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7116038 aagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaag 7115959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 11987865 - 11987767
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    |||||||| |||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11987865 ataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaaca 11987767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 12006496 - 12006398
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||  |||||||||||||||||    
T  12006496 ataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaaca 12006398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 9274277 - 9274361
Alignment:
Q  141 agtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaac 225  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaac 9274361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 9291676 - 9291784
Alignment:
Q  119 aaaaactcatataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaaga 217  Q
    ||||||||| |||||||| |||||||||| | |||| |||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  9291676 aaaaactcagataatcaataagaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaaga 9291775  T
Q  218 cttccaaca 226  Q
    ||| |||||    
T  9291776 ctttcaaca 9291784  T

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Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 8573877 - 8573798
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacat 234  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  8573877 ctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacat 8573798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 10352882 - 10352971
Alignment:
Q  137 aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    |||||||||||| ||| ||||| ||||||| ||||||||| |||||||  |||||||||||||||| |||||||||||||||||||||||    
T  10352882 aagaagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaaca 10352971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 12013009 - 12012925
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacata 107  Q
    |||||||||||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||| || ||||||||||||    
T  12013009 taagaattcaatttgacctttaacatggagtctaactacatatatcatatgatgggtccattgaattgatattaacttatacata 12012925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 10347552 - 10347631
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacat 234  Q
    |||||||||| | |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  10347552 ctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacat 10347631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 11987944 - 11987863
Alignment:
Q  26 gaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacata 107  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||| |||| |||||||||||||||| || ||||||||||||    
T  11987944 gaattcaatttgacctttaacataaagtttaactacatatatcacatgatgggtccattgaattgatattaacttatacata 11987863  T

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Target: chr2; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 10371509 - 10371604
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 118  Q
    |||||||||||||||||||||| || ||||||||||| ||||||| |||||| || ||||||||| ||| || |||||||||| | ||||||||||    
T  10371509 taagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactca 10371604  T

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Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 12019266 - 12019168
Alignment:
Q  129 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||| |   |  || |||| |||| |||||||||||||||||||||||||||    
T  12019266 ataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaaca 12019168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 9272317 - 9272417
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||| |||||||||||| | |||||| | || | ||||||||| |||| |||| || |||||| ||||||||||||||||||||| |||||    
T  9272317 taagaattcaattagacctttagcattgggtttaattgcaaagatcatatgatgggttcattaaactgacattaacttatacatagcaaaaactaaaaaa 9272416  T
Q  123 a 123  Q
    |    
T  9272417 a 9272417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 10335649 - 10335718
Alignment:
Q  157 cttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    ||||||||||||||||| ||||||||||  |||||||||||| ||||||||||  |||||||||||||||    
T  10335649 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaaca 10335718  T

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Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 8573988 - 8573931
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtc 80  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  8573988 taagaatttaatttgacctttagcatagagtttaaccacatatatcatatgatgggtc 8573931  T

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Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 10341140 - 10341211
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    |||||||||| | |||||||||||||||||  ||| |||||||||||| |||||||||| | ||||||||||    
T  10341140 ctcttgcttgaaggattctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaaca 10341211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 9065962 - 9065894
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    |||||| |||| ||||||||||||   ||| ||||||||||||||||||||| ||||||||||||| |||||    
T  9065962 ctcttggttgttcgattctccttc---ctacaattatcaacagggaaggaagttggtacaagactttcaaca 9065894  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 9364287 - 9364351
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaa 87  Q
    ||||||||| ||||||||||||  ||||||||||| | |||||||||||||| |||| |||||||    
T  9364287 taagaattccatttgacctttaatatagagtttaagtacatatatcatatgatgggttcattgaa 9364351  T

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Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 12019326 - 12019282
Alignment:
Q  46 catagagtttaacttcatatatcatatgacgggtccattgaattg 90  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  12019326 catagagtttaactacatatatcatatgatgggtccattgaattg 12019282  T

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Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 9291608 - 9291655
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcat 70  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  9291608 taagaattcaatttaacctttagcatagagtttaactacatgtatcat 9291655  T

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Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 9364442 - 9364490
Alignment:
Q  178 cttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 226  Q
    ||||||| ||||||||||||| || ||||||||||||||||| ||||||    
T  9364442 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaaca 9364490  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 10371625 - 10371666
Alignment:
Q  155 ctcttgcttgtacgattctccttcttcctagaattatcaaca 196  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  10371625 ctcttgcttgtatgattctccttcttcctaccattatcaaca 10371666  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 9274232 - 9274276
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatat 67  Q
    |||||||||||  |||||||||||||| ||||||||| |||||||    
T  9274232 taagaattcaacatgacctttagcataaagtttaactacatatat 9274276  T

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Target: scaffold0667 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 4115 - 4315
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    ||||||||||||||||  ||||||| |||||||||||  ||| ||||||||| ||||||||||||  || || |||||||||| |||||||||| |||||    
T  4115 taagaattcaatttgagttttagcacagagtttaactaaataaatcatatgatgggtccattgaacagatattaacttatacacagcaaaaactgaaaaa 4214  T
Q  123 actcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttcc 222  Q
    ||||  |||||||| |  |||||||| |||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  4215 actcg-ataatcaata--agtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaacaggaaaggaaggtggtacaagacttcc 4311  T
Q  223 aaca 226  Q
    ||||    
T  4312 aaca 4315  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 37462141 - 37462327
Alignment:
Q  24 aagaattcaatttgaccttt-agcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactcaaaaa 122  Q
    |||||||||||||||||||| ||||||||  |||||| |||||||||||||| ||||||| |||| | |||  |||||||||||| |||||||||||||     
T  37462141 aagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaactaacagaaacttatacataacaaaaactcaaaa- 37462239  T
Q  123 actcatataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttcc 222  Q
                    ||| ||||||||||||||||||||||| |  | ||||||||||||| |||||||||||||||| | ||||| |||||||||| |    
T  37462240 ----------------gaaataccttctcttgctcttgcttgtcctgtcctccttcttcctacaattatcaacagggaaaggaggtgatacaagactttc 37462323  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 29443774 - 29443680
Alignment:
Q  25 agaattcaatttgaccttt-agcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 118  Q
    ||||||||||||||||||| | ||| ||||||||||  ||||||||||||| |||||||||||||||| || |||||||||| || |||||||||    
T  29443774 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 29443680  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 29468248 - 29468109
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatat-----gacgggtccattgaat-tgacatcaacttatacatagcaaaaact 116  Q
    |||||||||||||||||||||   | ||||||||||| ||||||||||||     ||  |||||||| | | ||| || |||||||||||| ||||||||    
T  29468248 taagaattcaatttgacctttta-acagagtttaactgcatatatcatatcatatgataggtccattaactgtgatattaacttatacataacaaaaact 29468150  T
Q  117 caaaaaactcatataatcaa-aagaagtaccttctcttgct 156  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  29468149 caaaaaactcagacaatcaataagaagtaccttctcttgct 29468109  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 29453757 - 29453663
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 118  Q
    |||||||||||||| || |||| |||| ||||||||| |||||||||||||| || || |||||| ||| || |||||||||| ||||||||||||    
T  29453757 taagaattcaattt-acttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaacttatacagagcaaaaactca 29453663  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 29422983 - 29423050
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattga 91  Q
    |||||||||||||||||||||   | |||||||||||  |||||||||||||  |||||||||||||||    
T  29422983 taagaattcaatttgacctttta-acagagtttaactagatatatcatatgatcggtccattgaattga 29423050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 29468090 - 29468060
Alignment:
Q  196 agggaaggaaggtggtacaagacttccaaca 226  Q
    |||||||||||||||||||||||||||||||    
T  29468090 agggaaggaaggtggtacaagacttccaaca 29468060  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 41967028 - 41966980
Alignment:
Q  186 aattatcaacagggaaggaaggtggtacaagacttccaacagaaaacat 234  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  41967028 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacat 41966980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 41967194 - 41967132
Alignment:
Q  23 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattg 85  Q
    |||||||||||||| ||||||| |||||||||||| | ||| |||  ||||| ||||||||||    
T  41967194 taagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtccattg 41967132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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