View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10727_low_18 (Length: 250)

Name: NF10727_low_18
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10727_low_18
NF10727_low_18
[»] chr6 (4 HSPs)
chr6 (1-242)||(33908448-33908689)
chr6 (43-122)||(9627131-9627210)
chr6 (26-127)||(12155378-12155477)
chr6 (25-115)||(1415582-1415672)
[»] chr8 (4 HSPs)
chr8 (25-128)||(14958087-14958190)
chr8 (49-129)||(9293213-9293293)
chr8 (27-100)||(15292570-15292642)
chr8 (27-100)||(15472939-15473011)
[»] chr5 (4 HSPs)
chr5 (25-127)||(7237052-7237154)
chr5 (25-122)||(38755696-38755790)
chr5 (25-116)||(41715115-41715205)
chr5 (25-77)||(40768521-40768572)
[»] chr2 (3 HSPs)
chr2 (32-116)||(38288436-38288520)
chr2 (49-116)||(31395153-31395219)
chr2 (25-78)||(15358850-15358903)
[»] chr3 (5 HSPs)
chr3 (25-109)||(8543102-8543187)
chr3 (30-116)||(11630097-11630184)
chr3 (43-109)||(8541448-8541515)
chr3 (35-78)||(43361690-43361733)
chr3 (26-78)||(29794574-29794626)
[»] chr1 (2 HSPs)
chr1 (56-116)||(28666876-28666936)
chr1 (34-127)||(7440913-7441006)
[»] chr4 (1 HSPs)
chr4 (31-111)||(865245-865325)
[»] scaffold0027 (1 HSPs)
scaffold0027 (50-129)||(43598-43677)
[»] chr7 (1 HSPs)
chr7 (65-116)||(15077105-15077156)
[»] scaffold0035 (1 HSPs)
scaffold0035 (67-119)||(24525-24577)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33908689 - 33908448
Alignment:
Q  1 aacggaactatagcagctctatagggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33908689 aacggaactatagcagctctatagggtaggcacaattggtcgaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat 33908590  T
Q  101 attttgttactagttgctgttcgaacaaatacaaatagnnnnnnntccggagaaaccaaaactcgtgcaaaaattcaaacgtacctgataagttattcat 200  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  33908589 attttgttactagttgctgttcgaacaaatacaaatagaaaaaaatccggagaaaccaaaactcgtgcaaaaattcaaatatacctgataagttattcat 33908490  T
Q  201 aaagaccttaaaatctatcagagatggaagttgacctatgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33908489 aaagaccttaaaatctatcagagatggaagttgacctatgct 33908448  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 9627210 - 9627131
Alignment:
Q  43 aactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttc 122  Q
    ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||| |||||    
T  9627210 aactgggttaacaaatatcatgtgttcattgtgtttctctttcattctcttatttaatcttttgtttctagttgttgttc 9627131  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 12155477 - 12155378
Alignment:
Q  26 gtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaa 125  Q
    |||||||||||| | | ||||| ||||| ||||||  ||||||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||| ||    
T  12155477 gtaggcacaatttgccgaactgtgttaaaaaatattgtgtgttcattgtctttctctttcgttctctta--taattttttgttactagttgttgttctaa 12155380  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 1415582 - 1415672
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtc-tttctctttcgttctcttatttaatattttgttactagtt 115  Q
    ||||| ||||||||| | |||||||||||||| |||| ||| || |||||| ||||||||||||||||||| ||||| |||||||| |||||    
T  1415582 ggtagccacaattggccgaactgcgttaacaagtatcgtgtatttattgtcttttctctttcgttctctta-ttaatcttttgttattagtt 1415672  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 14958087 - 14958190
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcga 124  Q
    ||||||||||||||| | ||||| ||||||||||||| | ||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||| |    
T  14958087 ggtaggcacaattggccgaactgtgttaacaaatatcctatgttcattgtcttcctctttcgttctcttgtttaatcttttgttactagttgttgttcta 14958186  T
Q  125 acaa 128  Q
    ||||    
T  14958187 acaa 14958190  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 9293293 - 9293213
Alignment:
Q  49 gttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaacaaa 129  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||  |||| ||||| ||||||    
T  9293293 gttaacaaatattgtgtgttcattgtctttctcttttgttctcttatttaatcttttgttaccggttgatgttctaacaaa 9293213  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 15292642 - 15292570
Alignment:
Q  27 taggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat 100  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||  ||||  ||||||||||||||||||||    
T  15292642 taggcacaattggtcgaactgcgttaac-aatatcgtgtgttcattaacttttactttcgttctcttatttaat 15292570  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 15473011 - 15472939
Alignment:
Q  27 taggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat 100  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||  ||||  ||||||||||||||||||||    
T  15473011 taggcacaattggtcgaactgcgttaac-aatatcgtgtgttcattaacttttactttcgttctcttatttaat 15472939  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 7237154 - 7237052
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcga 124  Q
    ||||| || |||||| | ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||| |    
T  7237154 ggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttactggttactgttcta 7237055  T
Q  125 aca 127  Q
    |||    
T  7237054 aca 7237052  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 38755696 - 38755790
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttc 122  Q
    ||||||||||||||  |||||||  |||||||||||  |||||||||   |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  38755696 ggtaggcacaattgaccaaactgtattaacaaatatggtgtgttcat---ctttctctttcgttctcttatttaatcttttgttactagttgttgttc 38755790  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 41715115 - 41715205
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 116  Q
    ||||||||||||||  | |||||| |||||||  ||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  41715115 ggtaggcacaattgtccgaactgcattaacaag-atcgtatgttaattgtctttctctttcgttctcttatttaatcttttgttactagttg 41715205  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 40768572 - 40768521
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctt 77  Q
    ||||||||| |||||||||||||||| |||||| ||||| | |||||||||||    
T  40768572 ggtaggcaccattggtcaaactgcgtaaacaaaaatcatat-ttcattgtctt 40768521  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 38288520 - 38288436
Alignment:
Q  32 acaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 116  Q
    |||||||| | |||| ||||||||||||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||    
T  38288520 acaattggccgaactacgttaacaaatatcatgtgttaattgtctttctctttcaatctcttatttaatcttttgttactagttg 38288436  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 31395219 - 31395153
Alignment:
Q  49 gttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 116  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||    
T  31395219 gttaacaaatatcatgtgttcattgtcttttactttcgttttcttattt-atattttgttactagttg 31395153  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 15358903 - 15358850
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtcttt 78  Q
    ||||||||  ||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  15358903 ggtaggcatcattagtcaaactgcgttaacaaagatcttgtgttcattgccttt 15358850  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 8543102 - 8543187
Alignment:
Q  25 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctct-ttcgttctcttatttaatattttgtta 109  Q
    ||||||||||||||| | ||||||||||||||||||| | |||||||||||||||| | |||||||||||||||||| ||||||||    
T  8543102 ggtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctcttatttaatcttttgtta 8543187  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 11630097 - 11630184
Alignment:
Q  30 gcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat-attttgttactagttg 116  Q
    |||||||||| ||||||| ||||||||||||| | || ||||||||||| ||||| |||||||||||||||  |||||||||||||||    
T  11630097 gcacaattggccaaactgtgttaacaaatatcgtatgatcattgtctttttcttttgttctcttatttaatctttttgttactagttg 11630184  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 8541448 - 8541515
Alignment:
Q  43 aactgcgttaacaaatatcatgtgttcattgtctttctct-ttcgttctcttatttaatattttgtta 109  Q
    ||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||| ||||||||    
T  8541448 aactgcgttaacaaatatcgtgtgtgcgttgtctttctctcttcgttctcttatttaatcttttgtta 8541515  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 43361690 - 43361733
Alignment:
Q  35 attggtcaaactgcgttaacaaatatcatgtgttcattgtcttt 78  Q
    ||||| |||||| |||||||||||||||||||||||||||||||    
T  43361690 attggccaaactacgttaacaaatatcatgtgttcattgtcttt 43361733  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 29794626 - 29794574
Alignment:
Q  26 gtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtcttt 78  Q
    ||||||||||||| || || |||||||||||||||| |||||  |||||||||    
T  29794626 gtaggcacaattgatcgaattgcgttaacaaatatcgtgtgtctattgtcttt 29794574  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 28666876 - 28666936
Alignment:
Q  56 aatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28666876 aatatcgtgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttg 28666936  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 7440913 - 7441006
Alignment:
Q  34 aattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaaca 127  Q
    |||||| | ||||||||||||||||||| | | |  ||||| |||  |||||||||||||||||||| || ||||||||| || ||||| ||||    
T  7440913 aattggccgaactgcgttaacaaatatcgtatatatattgttttttactttcgttctcttatttaatcttatgttactagatgttgttctaaca 7441006  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 865325 - 865245
Alignment:
Q  31 cacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttact 111  Q
    |||||||| || |||  |||||||||||||| ||| |||||| |||||  |||||||||||||||||||| ||||||||||    
T  865325 cacaattgatcgaaccacgttaacaaatatcgtgttttcattttcttttactttcgttctcttatttaattttttgttact 865245  T

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Target: scaffold0027 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 43677 - 43598
Alignment:
Q  50 ttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaacaaa 129  Q
    ||||||||||| ||||||| ||| ||||||||||| |||||||||||||||  |||  |||||||||||| || ||||||    
T  43677 ttaacaaatattatgtgtttattatctttctcttttgttctcttatttaatcattttatactagttgctgctctaacaaa 43598  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 15077156 - 15077105
Alignment:
Q  65 tgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 116  Q
    |||||||||| |||  |||||||||||||||||||| | |||||||||||||    
T  15077156 tgttcattgttttttactttcgttctcttatttaatctgttgttactagttg 15077105  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 24525 - 24577
Alignment:
Q  67 ttcattgtctttctctttcgttctcttatttaatattttgttactagttgctg 119  Q
    ||||||||||||  |||| ||||||||||||||| || |||||| ||||||||    
T  24525 ttcattgtcttttacttttgttctcttatttaatcttctgttaccagttgctg 24577  T

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