View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_low_20 (Length: 250)
Name: NF10727_low_20
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 36383437 - 36383197
Alignment:
| Q |
5 |
gagtagcataggttggcatgagcaagtcaatactacttcaaatgctctttagaacttcaaatgtagttgaagaataatgtccaactaaaaagtacttata |
104 |
Q |
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| T |
36383437 |
gagtaccataggttggcatgagcaagtcaatactacttcaaatgctctttagaacttcaaatgtagttgaagaataatgtccaactaaaaagtacttata |
36383338 |
T |
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| Q |
105 |
aattatatatgaacacaatgtatccatgacatttggttgaaaacacccatcattcaatattatgtcatcttttggatcaacggatgcaacannnnnnnat |
204 |
Q |
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| T |
36383337 |
aat----tatgaacacaatgtatccatgacatttggttgaaaacacccatcattcaatattatgtcatcttttggatcaaccgatccaaca-ttttttat |
36383243 |
T |
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| Q |
205 |
caagtattatagtggttagaattcacatttgagtaataccaataac |
250 |
Q |
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| T |
36383242 |
caagtagtatagtagttaaaattcacatttaagtagtgccaataac |
36383197 |
T |
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