View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10727_low_22 (Length: 242)
Name: NF10727_low_22
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33909102 - 33909324
Alignment:
| Q |
1 |
aataagttcaatggtgagcttcctcaaaatttgtcatcaagtatttcacttctggatataagttataatcaattttctggtggaattccaattggagtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33909102 |
aataagttcaatggtgagcttcctcaaaatttgtcatcaagtatttcacttttggatataagttataatcaattttctggtggaattccaattggagtat |
33909201 |
T |
|
| Q |
101 |
cttcttggactaatgtggttgagttcatagcaagcaagaataatcttaatggaagtattccacaagagataacatcacttcataagctacaaaaattgtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
33909202 |
cttcttggactaatgtggttgagttcatagcaagcaagaataatcttaatggaagtattccacaagagataacatcacttcataagctacaaacactgtc |
33909301 |
T |
|
| Q |
201 |
gcttgatcagaatcagctaaaag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33909302 |
gcttgatcagaatcagctaaaag |
33909324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33884871 - 33885093
Alignment:
| Q |
1 |
aataagttcaatggtgagcttcctcaaaatttgtcatcaagtatttcacttctggatataagttataatcaattttctggtggaattccaattggagtat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| || | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
33884871 |
aataagttcaatggtgaaattcctcaaaatttgtcttcaagtatttcagtttttgatataagttacaatcaattttatggtggaattccaattggagtat |
33884970 |
T |
|
| Q |
101 |
cttcttggactaatgtggttgagttcatagcaagcaagaataatcttaatggaagtattccacaagagataacatcacttcataagctacaaaaattgtc |
200 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||| | |||| ||| || ||| ||||| |
|
|
| T |
33884971 |
cttcttggactagtgtggttgagtttatagcaagcaagaattatcttaatggaagtattcctcaagagttaacaactcttcctaatcttgaaagattgtt |
33885070 |
T |
|
| Q |
201 |
gcttgatcagaatcagctaaaag |
223 |
Q |
| |
|
||||||||| || |||||||||| |
|
|
| T |
33885071 |
gcttgatcaaaaccagctaaaag |
33885093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33896401 - 33896179
Alignment:
| Q |
1 |
aataagttcaatggtgagcttcctcaaaatttgtcatcaagtatttcacttctggatataagttataatcaattttctggtggaattccaattggagtat |
100 |
Q |
| |
|
|||||||||| |||||| | |||||||| || || ||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
33896401 |
aataagttcactggtgaaatgcctcaaaacttttcttcaagtatttcactttttgatataagttacaatcaattttatggtggaattccaattggagtat |
33896302 |
T |
|
| Q |
101 |
cttcttggactaatgtggttgagttcatagcaagcaagaataatcttaatggaagtattccacaagagataacatcacttcataagctacaaaaattgtc |
200 |
Q |
| |
|
|||||||||||||| | ||| |||| ||||||||||||||| |||| |||||||||||||| |||||| ||||| | |||| ||| || ||| | ||| |
|
|
| T |
33896301 |
cttcttggactaatctagttaagtttatagcaagcaagaattatctcaatggaagtattcctcaagagttaacaactcttcctaatcttgaaagactgtt |
33896202 |
T |
|
| Q |
201 |
gcttgatcagaatcagctaaaag |
223 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
33896201 |
gcttgatcaaaatcagctaaaag |
33896179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 24792365 - 24792251
Alignment:
| Q |
67 |
aatcaattttctggtggaattccaattggagtatcttcttggactaatgtggttgagttcatagcaagcaagaataatcttaa-tggaagtattccacaa |
165 |
Q |
| |
|
||||| ||||||||| |||||||| ||| |||||||| |||||||||||||| | || | ||||| || ||| |||||| |||||||||||||||| |
|
|
| T |
24792365 |
aatcagttttctggtagaattccatctggtgtatcttcatggactaatgtggtagtttttaatgcaaggaacaatt-tcttaaatggaagtattccacaa |
24792267 |
T |
|
| Q |
166 |
gagataacatcacttc |
181 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
24792266 |
gagttaacatcacttc |
24792251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 33916003 - 33916054
Alignment:
| Q |
58 |
ataagttataatcaattttctggtggaattccaattggagtatcttcttgga |
109 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
33916003 |
ataagttataatcggttttctggtagaattccaaatggagtttcttcttgga |
33916054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University