View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10727_low_24 (Length: 240)

Name: NF10727_low_24
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10727_low_24
NF10727_low_24
[»] chr4 (25 HSPs)
chr4 (18-240)||(33335243-33335466)
chr4 (36-161)||(43771854-43771977)
chr4 (31-139)||(34236736-34236843)
chr4 (38-140)||(45219014-45219115)
chr4 (55-123)||(22575376-22575444)
chr4 (39-161)||(31377572-31377692)
chr4 (34-140)||(29927318-29927425)
chr4 (58-140)||(10097920-10098002)
chr4 (58-140)||(49013839-49013921)
chr4 (39-90)||(21823090-21823140)
chr4 (58-137)||(32922831-32922910)
chr4 (58-140)||(41735461-41735543)
chr4 (85-126)||(6328409-6328450)
chr4 (31-102)||(29235567-29235637)
chr4 (58-161)||(35177003-35177106)
chr4 (58-141)||(37624862-37624945)
chr4 (85-143)||(1476303-1476360)
chr4 (59-141)||(14346972-14347054)
chr4 (53-140)||(35799013-35799102)
chr4 (95-141)||(43595050-43595096)
chr4 (66-124)||(50783559-50783617)
chr4 (55-124)||(31500133-31500202)
chr4 (65-114)||(34929507-34929556)
chr4 (64-140)||(11899958-11900034)
chr4 (58-102)||(32141396-32141440)
[»] chr6 (7 HSPs)
chr6 (31-161)||(7984578-7984707)
chr6 (48-132)||(15064571-15064654)
chr6 (31-140)||(40056-40164)
chr6 (58-139)||(3989029-3989112)
chr6 (36-140)||(31631826-31631928)
chr6 (38-138)||(12678632-12678730)
chr6 (55-146)||(25211648-25211739)
[»] chr8 (16 HSPs)
chr8 (37-161)||(13177734-13177857)
chr8 (31-146)||(42446566-42446680)
chr8 (65-146)||(45085565-45085646)
chr8 (58-102)||(10921722-10921766)
chr8 (58-121)||(515139-515202)
chr8 (58-140)||(33012647-33012728)
chr8 (58-122)||(32967738-32967802)
chr8 (58-121)||(2072187-2072250)
chr8 (55-158)||(41909214-41909317)
chr8 (69-139)||(13079294-13079364)
chr8 (58-139)||(6471195-6471276)
chr8 (52-123)||(34505200-34505271)
chr8 (84-139)||(45191894-45191947)
chr8 (84-138)||(1769146-1769200)
chr8 (55-124)||(7621504-7621573)
chr8 (58-119)||(32028047-32028108)
[»] chr3 (21 HSPs)
chr3 (58-161)||(44455124-44455227)
chr3 (58-161)||(4541286-4541389)
chr3 (55-158)||(40241960-40242063)
chr3 (55-161)||(15568513-15568619)
chr3 (55-140)||(15664492-15664577)
chr3 (53-140)||(23629257-23629344)
chr3 (59-116)||(50888879-50888936)
chr3 (38-141)||(26831815-26831917)
chr3 (35-106)||(27213970-27214040)
chr3 (60-138)||(29645590-29645668)
chr3 (56-125)||(48650323-48650392)
chr3 (58-112)||(25122359-25122413)
chr3 (58-141)||(3458545-3458628)
chr3 (91-146)||(20907610-20907665)
chr3 (58-105)||(37497658-37497705)
chr3 (58-116)||(26043410-26043468)
chr3 (97-139)||(50689128-50689170)
chr3 (53-139)||(54260882-54260968)
chr3 (17-82)||(52525498-52525561)
chr3 (55-112)||(53199785-53199842)
chr3 (58-140)||(30407200-30407283)
[»] chr2 (26 HSPs)
chr2 (31-135)||(13490850-13490953)
chr2 (35-158)||(9559663-9559785)
chr2 (58-161)||(14812254-14812357)
chr2 (55-161)||(37331818-37331924)
chr2 (55-147)||(1758452-1758544)
chr2 (55-139)||(12956835-12956919)
chr2 (58-146)||(42371949-42372037)
chr2 (58-116)||(7920228-7920286)
chr2 (58-128)||(31633478-31633548)
chr2 (58-139)||(13530545-13530626)
chr2 (61-148)||(29872835-29872925)
chr2 (58-140)||(31608198-31608279)
chr2 (58-139)||(2395072-2395153)
chr2 (65-161)||(3636443-3636539)
chr2 (88-139)||(16471130-16471181)
chr2 (37-139)||(44153149-44153250)
chr2 (101-139)||(7920140-7920178)
chr2 (34-140)||(9047600-9047705)
chr2 (58-140)||(15335869-15335951)
chr2 (58-112)||(34375288-34375342)
chr2 (95-140)||(223891-223936)
chr2 (55-116)||(7670187-7670248)
chr2 (70-135)||(26557602-26557667)
chr2 (31-140)||(36903971-36904079)
chr2 (113-161)||(3234639-3234687)
chr2 (53-140)||(40821224-40821312)
[»] chr7 (17 HSPs)
chr7 (62-139)||(1397861-1397938)
chr7 (55-139)||(29648541-29648625)
chr7 (30-124)||(3181199-3181292)
chr7 (58-161)||(27219880-27219982)
chr7 (58-122)||(29414669-29414733)
chr7 (34-158)||(7712497-7712620)
chr7 (56-115)||(25634736-25634795)
chr7 (36-158)||(24316273-24316394)
chr7 (85-139)||(30965739-30965793)
chr7 (41-138)||(12810466-12810562)
chr7 (98-139)||(41802596-41802637)
chr7 (91-135)||(9101547-9101591)
chr7 (96-139)||(45662236-45662279)
chr7 (76-141)||(8633775-8633841)
chr7 (56-102)||(33878196-33878242)
chr7 (35-141)||(37869718-37869823)
chr7 (58-158)||(42753223-42753322)
[»] chr5 (19 HSPs)
chr5 (35-140)||(1299923-1300027)
chr5 (17-129)||(16054383-16054492)
chr5 (31-140)||(37447235-37447342)
chr5 (64-158)||(34211207-34211301)
chr5 (60-140)||(2054058-2054138)
chr5 (56-118)||(3135622-3135684)
chr5 (85-159)||(6633008-6633082)
chr5 (58-139)||(39351026-39351107)
chr5 (58-96)||(25252431-25252469)
chr5 (58-96)||(25316216-25316254)
chr5 (58-140)||(27674807-27674889)
chr5 (31-141)||(29045331-29045440)
chr5 (88-161)||(564902-564975)
chr5 (85-140)||(10911041-10911096)
chr5 (95-140)||(10284981-10285026)
chr5 (56-140)||(12382617-12382704)
chr5 (58-115)||(13138528-13138585)
chr5 (95-140)||(15476959-15477004)
chr5 (65-141)||(42430473-42430549)
[»] chr1 (19 HSPs)
chr1 (58-159)||(52765518-52765618)
chr1 (58-161)||(32784794-32784896)
chr1 (53-139)||(4552186-4552272)
chr1 (55-146)||(40043309-40043399)
chr1 (61-119)||(12047236-12047294)
chr1 (39-119)||(40287554-40287632)
chr1 (58-110)||(11818196-11818248)
chr1 (55-126)||(41834776-41834847)
chr1 (30-139)||(32213521-32213627)
chr1 (34-158)||(3527669-3527790)
chr1 (87-155)||(13028976-13029044)
chr1 (52-135)||(1750922-1751005)
chr1 (58-161)||(3831361-3831464)
chr1 (58-141)||(4044884-4044967)
chr1 (58-141)||(38902169-38902251)
chr1 (95-141)||(38067711-38067757)
chr1 (59-140)||(38788711-38788792)
chr1 (63-135)||(5596289-5596361)
chr1 (53-117)||(45596035-45596099)
[»] scaffold0020 (1 HSPs)
scaffold0020 (58-161)||(171568-171671)
[»] scaffold0172 (1 HSPs)
scaffold0172 (31-102)||(28476-28547)
[»] scaffold0086 (1 HSPs)
scaffold0086 (53-135)||(23246-23328)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33335243 - 33335466
Alignment:
Q  18 cattatttaagaaaacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33335243 cattatttaagaaaacccacaaaaagaaactttgtttttaaaaatacaagtcaaatacatgtaaatatcataactacacaattttcaatataaaaattac 33335342  T
Q  118 tacttttggatgcttaaacaatgtattaagggcatttgttagcannnnnnnnaatagggtgccaaaatc-annnnnnnnccttcaaaagttagggggcca 216  Q
    ||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||||||          |||||||||||||||||||||    
T  33335343 tacttttggatgcttaaacaatgtattaaggacatttgttagcattttttttaatagggtgccaaaatcgtttttttttccttcaaaagttagggggcca 33335442  T
Q  217 aaagtgttgaaaaaactatttaat 240  Q
    ||||||||||||||||||||||||    
T  33335443 aaagtgttgaaaaaactatttaat 33335466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 43771854 - 43771977
Alignment:
Q  36 acaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||  |||||||| |||||||  |||| |||||||||||||||||| |||||||||    
T  43771854 acaaaaagaaactttgtctt-aaaaatacaagtcaaacacatgttaaagtcataactgcacaatta-caatgtaaaaattactacttttgaatgcttaaa 43771951  T
Q  136 caatgtattaagggcatttgttagca 161  Q
    ||||||  |||||||| |||||||||    
T  43771952 caatgtcataagggcacttgttagca 43771977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 34236736 - 34236843
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||||||||||||||| ||||| || |||||||||| ||||| ||||||||| |||||||||||||||||| |||| ||||||| |  |||| |||||||    
T  34236736 aacccacaaaaagaaattttgtctt-aaaaatacaattcaaaaacatgtaaaaatcataactacacaatttgcaatgtaaaaatcatcacttatggatgc 34236834  T
Q  131 ttaaacaat 139  Q
    |||||||||    
T  34236835 ttaaacaat 34236843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 45219014 - 45219115
Alignment:
Q  38 aaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaaca 137  Q
    ||||||||| ||||| ||||||| || |||| ||||| |||||||  |||||| ||||||||||  ||||||||||||||||||||| ||||||||||||    
T  45219014 aaaaagaaattttgtctttaaaa-tataagtaaaacatatgtaaaagtcataagtacacaatttcaaatataaaaattactacttttagatgcttaaaca 45219112  T
Q  138 atg 140  Q
    |||    
T  45219113 atg 45219115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 22575376 - 22575444
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttt 123  Q
    ||||||||||||||||||||||||||||  |||||| |||| |||||||||||||||||||| ||||||    
T  22575376 ttaaaaatacaagtcaaacacatgtaaaagtcataattacataattttcaatataaaaattattacttt 22575444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 31377572 - 31377692
Alignment:
Q  39 aaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaa 138  Q
    |||||||||||||| || |||| |||||||||||||||||||||  |||||| |||||||||||| || ||||| |||||||||     |||||||||||    
T  31377572 aaaagaaactttgtcttgaaaa-tacaagtcaaacacatgtaaa-gtcataattacacaattttctatgtaaaagttactacttcaaattgcttaaacaa 31377669  T
Q  139 tgtattaagggcatttgttagca 161  Q
    ||   |||||||| |||||||||    
T  31377670 tgccctaagggcacttgttagca 31377692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 29927318 - 29927425
Alignment:
Q  34 ccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatt--actacttttggatgct 131  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||| ||||  ||||||||| |||||||||||| |||||  |  |||||| ||| |||||    
T  29927318 ccacaaaaagaaactttgtcttggaaa-tacaagtcaaacacatataaaagtcataactatacaattttcaatgtaaaatatacactactattgaatgct 29927416  T
Q  132 taaacaatg 140  Q
    |||||||||    
T  29927417 taaacaatg 29927425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 10098002 - 10097920
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||||| ||| |||| |||||||||  ||||||||| ||||||||||||||||||||||||  ||||| | | ||||||||||    
T  10098002 aaaatataaggcaaatacatgtaaaagtcataactatacaattttcaatataaaaattactgtttttgaaaggttaaacaatg 10097920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 49013839 - 49013921
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||||| |||| ||| |||| |||| |||||||||||||||| |||||  || ||||||| |||||||||||||||| |||||    
T  49013839 aaaatataagttaaatacatataaaaatcataactacacaatattcaaagtataaattaccacttttggatgcttaagcaatg 49013921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 21823090 - 21823140
Alignment:
Q  39 aaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataa 90  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||||    
T  21823090 aaaagaaactttgtttt-aaaactacaagtcaaacacatgtaaaaatcataa 21823140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 32922831 - 32922910
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaaca 137  Q
    |||||| || ||||| |||||||||  | ||||||| | |||||||||||||||||||||||| || ||||| |||||||    
T  32922831 aaaatataaatcaaatacatgtaaaagtgataactatataattttcaatataaaaattactacattcggatgtttaaaca 32922910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 41735461 - 41735543
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||||||||||||||||| ||| ||  ||||||    ||||||| ||||| ||||||| |||||||| |||||||||||||||    
T  41735461 aaaatacaagtcaaacacttgttaaagtcataatcgtacaatttccaatacaaaaattgctacttttagatgcttaaacaatg 41735543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 6328450 - 6328409
Alignment:
Q  85 tcataactacacaattttcaatataaaaattactacttttgg 126  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  6328450 tcataattacacaattttcaatataaaagttactacttttgg 6328409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 29235637 - 29235567
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaatttt 102  Q
    |||||||||||||||| ||||| || |||| || |||||||||||| |||||  | ||||||||||||||||    
T  29235637 aacccacaaaaagaaattttgtcttgaaaa-tagaagtcaaacacaggtaaaagttataactacacaatttt 29235567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 35177003 - 35177106
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    |||||| ||||||||||||||| ||  | |||| || |||| || ||| |||||| |||||| ||||||||  ||||||||||| ||||||  | |||||    
T  35177003 aaaataaaagtcaaacacatgttaaagttataaatatacaacttccaaaataaaagttactatttttggatatttaaacaatgttttaaggtaacttgtt 35177102  T
Q  158 agca 161  Q
    ||||    
T  35177103 agca 35177106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 37624862 - 37624945
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    |||||| ||||||||||| ||| ||  | |||||   ||||||||||||  |||| ||||||||||| ||||||||||||||||    
T  37624862 aaaatataagtcaaacacttgttaaagttataaccgtacaattttcaatgcaaaagttactacttttagatgcttaaacaatgt 37624945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 1476360 - 1476303
Alignment:
Q  85 tcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtat 143  Q
    ||||||||||||||||||| ||  |||| ||||||||||||||  ||||||||||||||    
T  1476360 tcataactacacaattttccatg-aaaagttactacttttggaaacttaaacaatgtat 1476303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 14347054 - 14346972
Alignment:
Q  59 aaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    |||||||| |||||||||| ||||  |||||||||| |||||||||||  |||| || ||| ||| | ||||||||| |||||    
T  14347054 aaatacaaatcaaacacatctaaaagtcataactacgcaattttcaatgaaaaatttcctaatttggtatgcttaaaaaatgt 14346972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 35799013 - 35799102
Alignment:
Q  53 ttttaaaaatacaagtcaaacacatgtaaata--tcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||| |||||| | |||||||||||||||| |  | |||| |||| || |||| ||| |||||||||||||||||| | |||||||||||    
T  35799013 ttttgaaaatatatgtcaaacacatgtaaaaaagtaataattacaaaagtttctatacaaaaattactacttttggttacttaaacaatg 35799102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 43595050 - 43595096
Alignment:
Q  95 acaattttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    ||||||||||||| |||| || |||||||| ||||||||||||||||    
T  43595050 acaattttcaatacaaaagttgctacttttagatgcttaaacaatgt 43595096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 50783617 - 50783559
Alignment:
Q  66 agtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactactttt 124  Q
    |||||||||||||||||  | |||| ||||||| |||| |||||||| |||||||||||    
T  50783617 agtcaaacacatgtaaaagtaataattacacaagtttctatataaaagttactactttt 50783559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 31500133 - 31500202
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactactttt 124  Q
    ||||||||| |||||||||||||||||| || |||| || ||| || ||||| ||||| |||||| ||||    
T  31500133 ttaaaaatataagtcaaacacatgtaaaaattataattatacatttctcaatgtaaaagttactattttt 31500202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 34929507 - 34929556
Alignment:
Q  65 aagtcaaacacatgtaaatatcataactacacaattttcaatataaaaat 114  Q
    |||| |||||||| ||||  |||||| |||||||||||||||||||||||    
T  34929507 aagtgaaacacatataaaagtcataaatacacaattttcaatataaaaat 34929556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 11900034 - 11899958
Alignment:
Q  64 caagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||||||||||||||  ||  ||||||||||||||||||  |||||||  |||||||||||  |  |||||||||||    
T  11900034 caagtcaaacacatgcgaaagtcataactacacaattttttatataaatgttactacttttaaagacttaaacaatg 11899958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 32141396 - 32141440
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaatttt 102  Q
    |||||||||||||||||||| |||| |||| ||||| ||||||||    
T  32141396 aaaatacaagtcaaacacatctaaaaatcacaactatacaatttt 32141440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 7984578 - 7984707
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||||  ||||||||||| |||||||||| ||||| || ||||||||||||||    
T  7984578 aacccacaaaaagaaactttgtcttgaaaa-tacaagtcaaacacatgtaaaagtcataactacaaaattttcaatgtaaaatttgctacttttggatgc 7984676  T
Q  131 ttaaacaatgtattaagggcatttgttagca 161  Q
    |||||||||||  |||||||| |||||||||    
T  7984677 ttaaacaatgtcctaagggcacttgttagca 7984707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 15064571 - 15064654
Alignment:
Q  48 tttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgctt 132  Q
    ||||| ||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  15064571 tttgtctttgaaaatacaagtcaaacatatgtaaa-atcataaatacacaattttcaatataaaagttactacttttagatgctt 15064654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 40056 - 40164
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||||||| ||||||| ||||| || |||| ||||| |||||||||||||||  |||||||||  ||||||||| | ||||| ||||| |||||||||||    
T  40056 aacccacataaagaaattttgtcttgaaaa-tacaaatcaaacacatgtaaaagtcataactatgcaattttcattgtaaaacttactgcttttggatgc 40154  T
Q  131 ttaaacaatg 140  Q
    ||||||||||    
T  40155 ttaaacaatg 40164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 3989029 - 3989112
Alignment:
Q  58 aaaatacaagtcaaacacatgtaa--atatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||||||||||||||||| |||  ||||||||| ||||||||||| ||| ||||| | ||||||||| ||||||||||||||    
T  3989029 aaaatacaagtcaaacacatataataatatcataaatacacaattttaaatgtaaaagtgactacttttagatgcttaaacaat 3989112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 31631928 - 31631826
Alignment:
Q  36 acaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    ||||||||||| ||||| || |||| || |||||||||| |  ||||| |||||| ||||||||||||| | ||||| |||| ||||||||||| |||||    
T  31631928 acaaaaagaaagtttgtcttgaaaa-tataagtcaaacatacataaat-tcataattacacaattttcattgtaaaagttaccacttttggatgtttaaa 31631831  T
Q  136 caatg 140  Q
    |||||    
T  31631830 caatg 31631826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 12678730 - 12678632
Alignment:
Q  38 aaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaaca 137  Q
    ||||||||| |||||||| |||| ||||||||||  | |||||||  | ||||||||||||||||| || ||||| ||| |||||||  |||||||||||    
T  12678730 aaaaagaaaatttgttttgaaaa-tacaagtcaataa-atgtaaaagttataactacacaattttcgatgtaaaagttaatacttttttatgcttaaaca 12678633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 25211739 - 25211648
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaa 146  Q
    ||||||||| ||||  |||||||||||| || |||| ||||||| |||  |||| |||||||||||||||   || ||||||||||| ||||    
T  25211739 ttaaaaatataagttgaacacatgtaaaaataataattacacaaatttttatattaaaattactacttttaattgtttaaacaatgttttaa 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 13177857 - 13177734
Alignment:
Q  37 caaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaac 136  Q
    |||||||||| ||||| || |||| |||||||||||||||||||||  ||||||||||| ||||| |||||||||| |||||||||||| ||||||||||    
T  13177857 caaaaagaaagtttgtcttgaaaa-tacaagtcaaacacatgtaaaagtcataactacataatttccaatataaaagttactacttttgaatgcttaaac 13177759  T
Q  137 aatgtattaagggcatttgttagca 161  Q
    ||||   | |||||| |||||||||    
T  13177758 aatgccctgagggcacttgttagca 13177734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 42446566 - 42446680
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||| ||||||||||| |||||||| ||||||| |||| ||| | |||||||  | ||||||||||||||||||||||||||||||| | |||||||||     
T  42446566 aacctacaaaaagaaattttgtttt-aaaaatataagttaaatatatgtaaaagttataactacacaattttcaatataaaaattacaatttttggatgt 42446664  T
Q  131 ttaaacaatgtattaa 146  Q
    ||||||||||| ||||    
T  42446665 ttaaacaatgtcttaa 42446680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 45085565 - 45085646
Alignment:
Q  65 aagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaa 146  Q
    ||||||||  ||| ||||||||||| ||||  |||||| ||| ||||||||| |||||||||||||||||||||||| ||||    
T  45085565 aagtcaaatgcatataaatatcatatctacgtaatttttaatgtaaaaattattacttttggatgcttaaacaatgtcttaa 45085646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 10921722 - 10921766
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaatttt 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  10921722 aaaatacaagtcaaacacatgtaaaaatcataactacacaatttt 10921766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 515202 - 515139
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactact 121  Q
    ||||||||||||||| | |||||||  ||||||||||||||||| |||| ||||||||||||||    
T  515202 aaaatacaagtcaaatatatgtaaaagtcataactacacaatttccaatttaaaaattactact 515139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 33012647 - 33012728
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    ||||||||||||||||| |||||||| ||||| |||||||| | ||||| ||||||||||||| |||  ||| ||||||||||    
T  33012647 aaaatacaagtcaaaca-atgtaaatgtcatacctacacaactctcaatgtaaaaattactacatttacatgtttaaacaatg 33012728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 32967738 - 32967802
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactactt 122  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||| | ||||| ||| |||||    
T  32967738 aaaatacaagtcaaactcatgtaaaaatcataactatacaattttcattgtaaaagttaatactt 32967802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 2072250 - 2072187
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactact 121  Q
    ||||||||| |||||||||| ||||  | |||||||||||||||| ||||||||| ||||||||    
T  2072250 aaaatacaaatcaaacacatataaaagttataactacacaatttttaatataaaagttactact 2072187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 41909214 - 41909317
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcattt 154  Q
    |||||||||||||| ||||| || ||||  ||||||||| |||||||| ||| ||||||| | ||  |||||||||||||| |||||  |||  ||||||    
T  41909214 ttaaaaatacaagttaaacatatctaaaagtcataactatacaatttttaatgtaaaaatgattatctttggatgcttaaataatgtcgtaaaagcattt 41909313  T
Q  155 gtta 158  Q
    ||||    
T  41909314 gtta 41909317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 13079364 - 13079294
Alignment:
Q  69 caaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||||||||||| ||||||| |  ||||||| | || ||||| ||||||||||| ||||||||||||||    
T  13079364 caaacacatgtaaaaatcataattgtacaatttcctatgtaaaagttactacttttagatgcttaaacaat 13079294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 6471195 - 6471276
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||||||||||||||| || ||||  | |||| || ||||||| ||| ||||||| ||||| |||||||| ||||||||||    
T  6471195 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaagataaaaactactaattttggatacttaaacaat 6471276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 34505200 - 34505271
Alignment:
Q  52 tttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttt 123  Q
    ||||| |||| | ||||||||||||||||||  |||||| || |||||||||||||| ||| ||| ||||||    
T  34505200 tttttgaaaaaataagtcaaacacatgtaaaagtcataattatacaattttcaatatcaaagttattacttt 34505271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 45191894 - 45191947
Alignment:
Q  84 atcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||    
T  45191894 atcataactacacaattttcaatat-aaagttactactttt-aatgcttaaacaat 45191947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 1769200 - 1769146
Alignment:
Q  84 atcataactacacaattttcaatataaaaattactacttttggatgcttaaacaa 138  Q
    ||||||||| ||||||||||||| ||||| ||| || |||| |||||||||||||    
T  1769200 atcataacttcacaattttcaatgtaaaagttattagttttagatgcttaaacaa 1769146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 7621504 - 7621573
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactactttt 124  Q
    |||| |||| ||||||||||||||||||  |||||| || | ||| |||||| ||||| |||||||||||    
T  7621504 ttaagaatataagtcaaacacatgtaaaagtcataattataaaatgttcaatgtaaaagttactactttt 7621573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 32028108 - 32028047
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattacta 119  Q
    ||||||||||||||| |||| |||| || |||| || |||||||||||| ||||| ||||||    
T  32028108 aaaatacaagtcaaatacatataaaaattataattatacaattttcaatgtaaaagttacta 32028047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 44455124 - 44455227
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    |||||||||||||||||||  ||||  ||||||||| |||||||||||| ||||| |||| |||||| ||| |||||||||||| |||||||||||||||    
T  44455124 aaaatacaagtcaaacacacataaaagtcataactatacaattttcaatgtaaaatttacgacttttagattcttaaacaatgtcttaagggcatttgtt 44455223  T
Q  158 agca 161  Q
    ||||    
T  44455224 agca 44455227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 4541389 - 4541286
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    ||||||||||||||| | |||||||  | |||| |||| |||| |||||||||||||||||| |||||||| |||||||||||  ||||||| |||||||    
T  4541389 aaaatacaagtcaaagatatgtaaaagttataattacaaaattctcaatataaaaattactaattttggatccttaaacaatgccttaagggtatttgtt 4541290  T
Q  158 agca 161  Q
    ||||    
T  4541289 agca 4541286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 40242063 - 40241960
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcattt 154  Q
    |||||||||||||| || ||||||||||   |||||||||||||||||| || |||||||||||||||||| ||| ||||||||||   ||||| |||||    
T  40242063 ttaaaaatacaagttaagcacatgtaaaaggcataactacacaattttccatgtaaaaattactacttttgaatgtttaaacaatgctctaaggacattt 40241964  T
Q  155 gtta 158  Q
    ||||    
T  40241963 gtta 40241960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 15568513 - 15568619
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcattt 154  Q
    |||||||| |||||||||||||| |||| | |||||||| |||||||| ||||||||| ||| |||||||| ||  ||||||||||  |||||  |||||    
T  15568513 ttaaaaatgcaagtcaaacacatataaaaagcataactatacaatttttaatataaaagttattacttttgaatatttaaacaatgctttaagaacattt 15568612  T
Q  155 gttagca 161  Q
    |||||||    
T  15568613 gttagca 15568619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 15664492 - 15664577
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||||||||||||| ||||||||||||| |||||||||| | || ||| ||||||||| ||| |||||||| ||| ||||||||||    
T  15664492 ttaaaaatacaagttaaacacatgtaaaaatcataactatataacttttaatataaaagttattacttttgaatgtttaaacaatg 15664577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 23629344 - 23629257
Alignment:
Q  53 ttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||| ||||||||| |||||||||||||||  |||||| || |||||||||||| ||||| |||||||||| ||||||| ||| ||||    
T  23629344 ttttgaaaatacaaatcaaacacatgtaaaagtcataattatacaattttcaatgtaaaagttactactttaggatgctaaaaaaatg 23629257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 50888879 - 50888936
Alignment:
Q  59 aaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatta 116  Q
    ||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||    
T  50888879 aaatacaagtcaaacacatgtaaaagttataactacacaatttttaatataaaaatta 50888936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 26831815 - 26831917
Alignment:
Q  38 aaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaaca 137  Q
    ||||||||| ||| ||||||||| || ||||||||| ||| |||| |||| |  ||||||||||  ||| |||||||||||||||||  |||||||||||    
T  26831815 aaaaagaaattttatttttaaaa-tataagtcaaactcatataaaaatcacatttacacaatttataatgtaaaaattactacttttaaatgcttaaaca 26831913  T
Q  138 atgt 141  Q
    ||||    
T  26831914 atgt 26831917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 27214040 - 27213970
Alignment:
Q  35 cacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaat 106  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||  ||||||||| ||||||| ||||    
T  27214040 cacaaaaagaaactttgtctt-aaaaatacaagtcaaacatatgtaaaagtcataactatacaatttccaat 27213970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 29645590 - 29645668
Alignment:
Q  60 aatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaa 138  Q
    ||||||||||||||||||||||| || ||||||| |||| ||| ||| ||||| |||||| |||| |||||| ||||||    
T  29645590 aatacaagtcaaacacatgtaaaaattataactatacaaattttaatgtaaaagttactatttttagatgctcaaacaa 29645668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 48650392 - 48650323
Alignment:
Q  56 taaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttg 125  Q
    ||||||||||||  ||||||| |||||  | |||||||||||||||| ||||||||| ||||||||||||    
T  48650392 taaaaatacaagataaacacaggtaaaagttataactacacaatttttaatataaaagttactacttttg 48650323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 25122413 - 25122359
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaa 112  Q
    ||||||||||||||||| | || ||  ||||||||||||||||||||||||||||    
T  25122413 aaaatacaagtcaaacatacgtgaaagtcataactacacaattttcaatataaaa 25122359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 3458545 - 3458628
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaa-ttttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    ||||||||||||||||| |||||||  |||||| ||||||| |||||| |||||||  |||||| |||| ||| |||||||||||    
T  3458545 aaaatacaagtcaaaca-atgtaaacgtcataattacacaaattttcattataaaatatactacatttgaatgtttaaacaatgt 3458628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 20907665 - 20907610
Alignment:
Q  91 ctacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaa 146  Q
    |||||||||||| ||||||| |||||||| |||| ||| |||||||||||| ||||    
T  20907665 ctacacaatttttaatataagaattactatttttagatacttaaacaatgtcttaa 20907610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 37497658 - 37497705
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaa 105  Q
    |||||| ||||||||  ||||||||| |||||||||||||||||||||    
T  37497658 aaaatataagtcaaatgcatgtaaatgtcataactacacaattttcaa 37497705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 26043468 - 26043410
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatta 116  Q
    |||||| |||| |||||||||||||   ||| ||||||||||||||||| |||||||||    
T  26043468 aaaatataagttaaacacatgtaaaagacatgactacacaattttcaatgtaaaaatta 26043410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 50689170 - 50689128
Alignment:
Q  97 aattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||| |||||||||||||||||||||  |||||||||||||    
T  50689170 aattttaaatataaaaattactacttttaaatgcttaaacaat 50689128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 54260968 - 54260882
Alignment:
Q  53 ttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||| |||||| |||||||| || ||| ||  |||||| |||| |||||| |||  |||||||||||||||| |||| |||||||||    
T  54260968 ttttgaaaataaaagtcaaatacctgttaaactcataaatacataatttttaatgcaaaaattactacttttagatgattaaacaat 54260882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 52525561 - 52525498
Alignment:
Q  17 acattatttaagaaaacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaa 82  Q
    |||||||||||| || |||| ||||||||| |||||||| ||||||| |||||||| |||||||||    
T  52525561 acattatttaaggaa-cccataaaaagaaattttgtttt-aaaaatataagtcaaatacatgtaaa 52525498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 53199842 - 53199785
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaa 112  Q
    ||||||||| || |||||||||||| ||  ||||||||| |||||||||||| |||||    
T  53199842 ttaaaaataaaaatcaaacacatgttaaagtcataactaaacaattttcaatgtaaaa 53199785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 30407283 - 30407200
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaata-tcataactacacaattttcaatataaaaattactacttttggatgc-ttaaacaatg 140  Q
    ||||||||||| ||| ||||||||| | ||||| ||| | ||||| |||| ||||||||||||||||||||| | ||||||||||    
T  30407283 aaaatacaagttaaaaacatgtaaaaagtcatatctatataatttccaat-taaaaattactacttttggatactttaaacaatg 30407200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 13490850 - 13490953
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||||||||||| ||| ||||| || |||| || ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  13490850 aacccacaaaaataaattttgtcttgaaaa-tataaggcaaacacatgtaaaaatcataactatacaattttcaatataaaaattactatttttgaatgc 13490948  T
Q  131 ttaaa 135  Q
    |||||    
T  13490949 ttaaa 13490953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 9559663 - 9559785
Alignment:
Q  35 cacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaa 134  Q
    |||||||| ||| |||||||| |||| |||||||||||||| |||||| || ||||||||||||||| |||| ||||| ||| || ||||| ||||||||    
T  9559663 cacaaaaataaattttgttttgaaaa-tacaagtcaaacacgtgtaaaaattataactacacaatttccaatgtaaaagttaatatttttgaatgcttaa 9559761  T
Q  135 acaatgtattaagggcatttgtta 158  Q
    |||||||  |||||||| ||||||    
T  9559762 acaatgtcctaagggcacttgtta 9559785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 14812357 - 14812254
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    ||||||||||||||||| |||||||  | |||| ||||||||||||||| ||||| ||| |||||||| ||||||||||||||   |||||||| |||||    
T  14812357 aaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaaagttaatacttttgaatgcttaaacaatgccgtaagggcacttgtt 14812258  T
Q  158 agca 161  Q
    ||||    
T  14812257 agca 14812254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 37331818 - 37331924
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcattt 154  Q
    ||||||||| |||||||| | || | || ||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||| | ||||   |||||    
T  37331818 ttaaaaatataagtcaaatatatattaaaatcataattacacaattgtcaatacaaaaattactacttttagatgcttaaacaatatcttaataacattt 37331917  T
Q  155 gttagca 161  Q
    |||||||    
T  37331918 gttagca 37331924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 1758544 - 1758452
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaag 147  Q
    ||||||||| |||||||||||||||| |  ||||| ||||||||||||  ||  |||| ||||||||||| |||||||||||||||| |||||    
T  1758544 ttaaaaatataagtcaaacacatgtagaagtcatatctacacaattttttatgcaaaagttactacttttagatgcttaaacaatgtcttaag 1758452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 12956919 - 12956835
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||||||||||||||||||||||| ||  ||||||||| ||||||| || | | |||||| ||||||||| |||||||||||||    
T  12956919 ttaaaaatacaagtcaaacacatgtcaaagtcataactatacaatttccattgttaaaatttctacttttgtatgcttaaacaat 12956835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 42371949 - 42372037
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaa 146  Q
    |||||| |||| ||||| ||||| || | |||||||||||||||| |||||||||||||| | ||||| ||||||||||||||| ||||    
T  42371949 aaaatataagttaaacatatgtagatgttataactacacaatttttaatataaaaattacaatttttgaatgcttaaacaatgtcttaa 42372037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 7920228 - 7920286
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatta 116  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  7920228 aaaatacaaatcaaacacatgtaaaaatcataactacacaattttcaatgtagaaatta 7920286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 31633548 - 31633478
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggat 128  Q
    ||||||||||||||||| |||||||   |||||||||||||||| |||| |||||||||||| ||||||||    
T  31633548 aaaatacaagtcaaacatatgtaaaaggcataactacacaatttccaatgtaaaaattactaattttggat 31633478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 13530626 - 13530545
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||||||||||||||| || || |  |||||| ||||||||||||||  |||||| ||||| |||||||||||||||||||    
T  13530626 aaaatacaagtcaaacatatatacaagtcataattacacaattttcaaagtaaaaactactaattttggatgcttaaacaat 13530545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 29872835 - 29872925
Alignment:
Q  61 atacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaat---tactacttttggatgcttaaacaatgtattaagg 148  Q
    |||||||||||| |||||||   |||||||||||||||||||  ||||||||||   ||||||||||| ||||||| |||||| |||||||    
T  29872835 atacaagtcaaatacatgtacgaatcataactacacaatttttcatataaaaattagtactacttttgaatgcttatacaatgcattaagg 29872925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 31608198 - 31608279
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    ||||| |||| | ||||||| |||| |||||||||| |||||||| |||||||||||||||| |||   ||||||||||||||    
T  31608198 aaaatgcaagactaacacatataaaaatcataactatacaatttttaatataaaaattacta-tttgttatgcttaaacaatg 31608279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 2395072 - 2395153
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||||||||||||  |||| ||||  |||||||||||||||||  ||| | ||| ||||| |||||||||| |||||||||    
T  2395072 aaaatacaagtcaagtacatataaaagtcataactacacaatttctaatgtgaaatttactgcttttggatgtttaaacaat 2395153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 3636443 - 3636539
Alignment:
Q  65 aagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgttagca 161  Q
    |||||||||| |||||||  | |||| |||| || |||| |  ||||| ||||||||||| | ||||||||||||| || ||||||| |||||||||    
T  3636443 aagtcaaacaaatgtaaaagtaataattacagaagtttctaggtaaaagttactacttttagttgcttaaacaatgcatcaagggcacttgttagca 3636539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 16471181 - 16471130
Alignment:
Q  88 taactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||||||| |||| | ||||||| ||| ||||||||||||||||||||||    
T  16471181 taactacacagtttttattataaaagttattacttttggatgcttaaacaat 16471130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 44153250 - 44153149
Alignment:
Q  37 caaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactactttt-ggatgcttaaa 135  Q
    |||||||||| |||||||| |||| |||||| |||||| || |||| ||  || |||||||||||  ||| |||||||||||| |||| |||||||||||    
T  44153250 caaaaagaaattttgttttgaaaa-tacaagccaaacatatataaaaattcta-ctacacaatttataatgtaaaaattactattttttggatgcttaaa 44153153  T
Q  136 caat 139  Q
    ||||    
T  44153152 caat 44153149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 7920140 - 7920178
Alignment:
Q  101 ttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  7920140 ttcaatttaaaaattactatttttggatgcttaaacaat 7920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 9047705 - 9047600
Alignment:
Q  34 ccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgctta 133  Q
    ||||||||||||| | |||||| |||| |||||||||||||| ||| ||  |||||||   |||||||||||| ||||| ||  |||||||  ||| |||    
T  9047705 ccacaaaaagaaattatgttttgaaaa-tacaagtcaaacacttgttaaagtcataaccgtacaattttcaatgtaaaagttgttacttttatatgatta 9047607  T
Q  134 aacaatg 140  Q
    |||||||    
T  9047606 aacaatg 9047600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 15335869 - 15335951
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    ||||||||||||||||| |||| ||  |||||| |  |||||||  |||  ||||||| |||||||| |||||||||||||||    
T  15335869 aaaatacaagtcaaacatatgttaaagtcataattgtacaatttcaaatgcaaaaattgctacttttagatgcttaaacaatg 15335951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 34375288 - 34375342
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaa 112  Q
    ||||||||||||||||| || ||||| |||||| |||||||| |||||| |||||    
T  34375288 aaaatacaagtcaaacatatataaatgtcataattacacaatattcaatgtaaaa 34375342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 223936 - 223891
Alignment:
Q  95 acaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    ||||||||||||  ||||||| |||||||| |||||||||||||||    
T  223936 acaattttcaatgcaaaaattgctacttttagatgcttaaacaatg 223891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 7670187 - 7670248
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatta 116  Q
    |||||||||||||||||||| ||| |||  |||||| || |||||||||||| |||| ||||    
T  7670187 ttaaaaatacaagtcaaacatatggaaaagtcataattatacaattttcaatgtaaatatta 7670248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 26557602 - 26557667
Alignment:
Q  70 aaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    ||||||||| |||  ||||||||||| || ||| ||| ||||| |||||||||||||||| |||||    
T  26557602 aaacacatgcaaaagtcataactacataactttaaatgtaaaagttactacttttggatgtttaaa 26557667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 36903971 - 36904079
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||||||||||||||| | ||| || |||| |||||||||||||| | | ||  |||||||   ||||||| ||||  |||| || |||||||| |||||    
T  36903971 aacccacaaaaagaaattatgtcttgaaaa-tacaagtcaaacacttattaaagtcataaccgtacaatttccaatgcaaaagttgctacttttagatgc 36904069  T
Q  131 ttaaacaatg 140  Q
    ||||||||||    
T  36904070 ttaaacaatg 36904079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 3234687 - 3234639
Alignment:
Q  113 attactacttttggatgcttaaacaatgtattaagggcatttgttagca 161  Q
    |||| |||||||||||||||||||||||   |||||||| |||||||||    
T  3234687 attattacttttggatgcttaaacaatgccctaagggcacttgttagca 3234639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 40821224 - 40821312
Alignment:
Q  53 ttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattac-tacttttggatgcttaaacaatg 140  Q
    ||||||||||| |||||||| | || ||||  ||||||||  |||||||||||| ||||||| ||  | |||| |||||||||||||||    
T  40821224 ttttaaaaatataagtcaaatatatttaaaagtcataactgtacaattttcaatgtaaaaatgacaaattttttgatgcttaaacaatg 40821312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 1397861 - 1397938
Alignment:
Q  62 tacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||| |||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  1397861 tacaaatcaaacgcatttaaaaatcataactacacaatttttaatataaaaattactacttttaaatgcttaaacaat 1397938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 29648625 - 29648541
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||||||| |||| ||||||||||||| |||||||||||| ||||||||||  |||| ||||||| |||| ||| |||||||||    
T  29648625 ttaaaaatataagttaaacacatgtaaaaatcataactacataattttcaatgcaaaagttactacatttgaatggttaaacaat 29648541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 3181292 - 3181199
Alignment:
Q  30 aaacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactactttt 124  Q
    ||||| ||||||||| ||||||| || |||| ||||||||||| |  |||||| || |||||| ||||||||||||| |||||||||||||||||    
T  3181292 aaacctacaaaaagatactttgtcttgaaaa-tacaagtcaaatatttgtaaaaatgataactgcacaattttcaatgtaaaaattactactttt 3181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 27219880 - 27219982
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactac-ttttggatgcttaaacaatgtattaagggcatttgt 156  Q
    ||||||||| | ||||||||  ||| ||||||||||||||||||| ||| ||||||||||||| ||||| ||| ||||||||| |  |||||||| ||||    
T  27219880 aaaatacaaattaaacacat--aaaaatcataactacacaatttttaatgtaaaaattactactttttgaatgtttaaacaatatcctaagggcacttgt 27219977  T
Q  157 tagca 161  Q
    |||||    
T  27219978 tagca 27219982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 29414669 - 29414733
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactactt 122  Q
    ||||||||||||||| |||||||||  ||||| ||| |||||||||||| |||||||||||||||    
T  29414669 aaaatacaagtcaaatacatgtaaaagtcatacctatacaattttcaatgtaaaaattactactt 29414733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 7712497 - 7712620
Alignment:
Q  34 ccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgctta 133  Q
    ||||||||||||| |||||||| |||| ||||||||||||| || ||||  | |||| ||||||||||  ||  |||||| | ||| |||| ||||||||    
T  7712497 ccacaaaaagaaagtttgttttgaaaa-tacaagtcaaacaaatataaaagtgataattacacaatttctaaggtaaaaacttctaattttagatgctta 7712595  T
Q  134 aacaatgtattaagggcatttgtta 158  Q
    |||||||   |||||| ||||||||    
T  7712596 aacaatgccctaagggtatttgtta 7712620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 25634795 - 25634736
Alignment:
Q  56 taaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatt 115  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||| |||||    
T  25634795 taaaaatacaagtcaaacatatgtaaaaatgataactacacaatttccaacatagaaatt 25634736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 24316273 - 24316394
Alignment:
Q  36 acaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    ||||||||||| |||| |||| ||||||||||||||| |  | ||||  | |||| |||||||||| ||| ||||||  ||||| || |||||| |||||    
T  24316273 acaaaaagaaagtttg-ttttgaaaatacaagtcaaatatgtataaaagttataattacacaatttccaagataaaatctactaattatggatgtttaaa 24316371  T
Q  136 caatgtattaagggcatttgtta 158  Q
    |||||  |||||| |||||||||    
T  24316372 caatgccttaaggacatttgtta 24316394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 30965793 - 30965739
Alignment:
Q  85 tcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||| ||||||||||| |||||||||  ||||||||||||||| |||||||||    
T  30965793 tcataaatacacaatttttaatataaaagatactacttttggatgattaaacaat 30965739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 12810562 - 12810466
Alignment:
Q  41 aagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaa 138  Q
    |||||||||||| || |||| |||||||||||||||| ||||  | |||| ||||| |||||   | ||||| | |||||||||||||||||||||||    
T  12810562 aagaaactttgtcttgaaaa-tacaagtcaaacacatataaaagttataaatacacgattttttgtgtaaaagtaactacttttggatgcttaaacaa 12810466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 41802637 - 41802596
Alignment:
Q  98 attttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  41802637 attttcaatataaaaattactacttttagatgattaaacaat 41802596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 9101591 - 9101547
Alignment:
Q  91 ctacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  9101591 ctacataatttccaatataaaaactactacttttggatgcttaaa 9101547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 45662279 - 45662236
Alignment:
Q  96 caattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||    
T  45662279 caatttccaatataaaaattattacttttagatgcttaaacaat 45662236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 8633841 - 8633775
Alignment:
Q  76 atgtaaatatcataactacacaattttcaatataaaaattact-acttttggatgcttaaacaatgt 141  Q
    |||||||  |||||||||||||||||||||  ||||| ||||| | |||| ||||||||||||||||    
T  8633841 atgtaaaagtcataactacacaattttcaaggtaaaacttactaaattttagatgcttaaacaatgt 8633775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 33878242 - 33878196
Alignment:
Q  56 taaaaatacaagtcaaacacatgtaaatatcataactacacaatttt 102  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||||    
T  33878242 taaaaatacaaatcaaacatatgtaaaagtcataactacacaatttt 33878196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 37869823 - 37869718
Alignment:
Q  35 cacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaa 134  Q
    |||||||||||| | |||||| ||||||| ||||||||||| ||| ||  |||||||   ||||||||||||  |||| || ||||||||  || |||||    
T  37869823 cacaaaaagaaattatgtttt-aaaaatataagtcaaacacttgttaaagtcataaccgtacaattttcaatgcaaaagttgctacttttatatacttaa 37869725  T
Q  135 acaatgt 141  Q
    |||||||    
T  37869724 acaatgt 37869718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 42753322 - 42753223
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    ||||||||| ||||| ||| |||||  ||||||||  | ||||||||||||||| || |||  ||||| |||||| |||| ||| |||||| ||||||||    
T  42753322 aaaatacaactcaaatacaagtaaaattcataactgtataattttcaatataaatatcactgtttttgaatgcttcaacactgt-ttaaggacatttgtt 42753224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 1299923 - 1300027
Alignment:
Q  35 cacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaa 134  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||| |||| || |||  || ||||||||||||| |||||| |||||||| | |||    
T  1299923 cacaaaaagaaaatttatttt-aaaaatacaagtcaaacacatgtaaaaatcacaattacgtaaatttcaatataaaatttactatttttggatacctaa 1300021  T
Q  135 acaatg 140  Q
    ||||||    
T  1300022 acaatg 1300027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 16054492 - 16054383
Alignment:
Q  17 acattatttaagaaaacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatta 116  Q
    ||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||  |||||| |||| |||||||||| ||||| |||    
T  16054492 acattgtttaagaaa-cccacaaaaagaaattttgttttt-aaaatacaagtcaaacacatataaaagtcataa-tacataattttcaatgtaaaagtta 16054396  T
Q  117 ctacttttggatg 129  Q
    | |||||| ||||    
T  16054395 ccacttttagatg 16054383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 37447342 - 37447235
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||| ||||||||||||||||| || |||| || ||||||||||||| ||||  |||||||| || |||||||||| |||| |||||||||||| ||| |    
T  37447342 aacctacaaaaagaaactttgtcttgaaaa-tataagtcaaacacatataaaattcataactgcataattttcaat-taaatattactacttttagatac 37447245  T
Q  131 ttaaacaatg 140  Q
    ||||||||||    
T  37447244 ttaaacaatg 37447235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 34211301 - 34211207
Alignment:
Q  64 caagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtta 158  Q
    ||||| ||| |||| ||||  |||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||   ||| |||||||||||    
T  34211301 caagttaaatacatataaaagtcataactacacaattttcaatgtaaaaattacaatttttggatgtttaaacaatgatctaacggcatttgtta 34211207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 2054058 - 2054138
Alignment:
Q  60 aatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||| |||| |||||||||||||  |||||||| ||||||||||||| ||||||| |||||||||  ||| ||||||||||    
T  2054058 aatagaagttaaacacatgtaaaagtcataactgcacaattttcaatgtaaaaatgactacttttatatgtttaaacaatg 2054138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 3135684 - 3135622
Alignment:
Q  56 taaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattact 118  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||| ||| |||||||||||    
T  3135684 taaaaatacaagtcaaacatatataaaagtcataactacacaatttttaatgtaaaaattact 3135622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 6633082 - 6633008
Alignment:
Q  85 tcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgttag 159  Q
    ||||||||| |||| ||| |||||||||||||||||||||  ||| ||||||||||| ||||| ||| |||||||    
T  6633082 tcataactatacaaattttaatataaaaattactacttttaaatgtttaaacaatgtcttaagagcacttgttag 6633008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 39351107 - 39351026
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||||||||||||||||||| ||||  |||||| || |||||||  ||| ||||||||||||||| || ||| |||||||||    
T  39351107 aaaatacaagtcaaacacatctaaaagtcataattatacaatttctaatgtaaaaattactacttctgaatgtttaaacaat 39351026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 25252431 - 25252469
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacac 96  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25252431 aaaatacaagtcaaacacatgtaaaaatcataactacac 25252469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 25316216 - 25316254
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacac 96  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25316216 aaaatacaagtcaaacacatgtaaaaatcataactacac 25316254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 27674807 - 27674889
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||||||||||||||||||||| ||| | ||||||||| |||||| |||  | |||||| |||||||| ||| ||||| ||||    
T  27674807 aaaatacaagtcaaacacatgtgaatgttataactacataatttttaatgcataaattattacttttgaatgtttaaataatg 27674889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 29045440 - 29045331
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgc 130  Q
    |||||||||||||||| ||   | ||||||||| || |||||||| ||| ||  ||||||||| | |||||| |||  |||||||||||||||| ||||     
T  29045440 aacccacaaaaagaaa-ttatatattaaaaatataaatcaaacacttgttaaagtcataactatataatttttaatgcaaaaattactacttttagatgg 29045342  T
Q  131 ttaaacaatgt 141  Q
    |||||||||||    
T  29045341 ttaaacaatgt 29045331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 564975 - 564902
Alignment:
Q  88 taactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgttagca 161  Q
    |||||| ||||||| ||||  |||| |||||| |||| ||||||||||||||||  ||||| ||||||||||||    
T  564975 taactatacaatttccaatgcaaaagttactatttttagatgcttaaacaatgtcctaaggacatttgttagca 564902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 10911096 - 10911041
Alignment:
Q  85 tcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||||| ||||||||| |||| ||||||| ||||| |||| |||||||||||||||    
T  10911096 tcataattacacaattctcaagataaaaactactaattttagatgcttaaacaatg 10911041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 10285026 - 10284981
Alignment:
Q  95 acaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    ||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  10285026 acaatttccaatacaaaagttactacttttagatgcttaaacaatg 10284981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 12382617 - 12382704
Alignment:
Q  56 taaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactact---tttggatgcttaaacaatg 140  Q
    ||||||||||||||||||| || ||||  ||||||  | |||||||||||| ||||| ||||||||   |||  ||||||||||||||    
T  12382617 taaaaatacaagtcaaacatatataaaagtcataaacatacaattttcaatgtaaaagttactactacttttacatgcttaaacaatg 12382704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 13138585 - 13138528
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaatt 115  Q
    |||||||||||||||||||| ||||  |||||| |||| ||||| |||| ||||||||    
T  13138585 aaaatacaagtcaaacacatataaaagtcataattacataatttccaatgtaaaaatt 13138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 15476959 - 15477004
Alignment:
Q  95 acaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    ||||||||||||| ||||||| ||||||||  ||||||||||||||    
T  15476959 acaattttcaataaaaaaattgctacttttatatgcttaaacaatg 15477004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 42430549 - 42430473
Alignment:
Q  65 aagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    ||||||||||||||| ||  |||||| |||| | |||  ||| ||||||||| |||||||| ||| |||||||||||    
T  42430549 aagtcaaacacatgtcaaagtcataattacaaattttgaaatgtaaaaattattacttttgaatgattaaacaatgt 42430473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 52765518 - 52765618
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    |||||| |||||||||| |||||||  |||||||||||||||| | ||| | ||||||||||||||| ||||||| |||||||| |||||| || |||||    
T  52765518 aaaatataagtcaaacatatgtaaacgtcataactacacaattgttaatgttaaaattactacttttagatgctt-aacaatgttttaaggacacttgtt 52765616  T
Q  158 ag 159  Q
    ||    
T  52765617 ag 52765618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 32784896 - 32784794
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    |||||| |||| ||||||||||||| |||||||||||| |||||| ||| |||||||| ||||||||  ||| ||||| |||||  |||| |||||||||    
T  32784896 aaaatataagttaaacacatgtaaaaatcataactacataatttttaatgtaaaaattgctacttttaaatgtttaaataatgt-ctaagagcatttgtt 32784798  T
Q  158 agca 161  Q
    ||||    
T  32784797 agca 32784794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 4552186 - 4552272
Alignment:
Q  53 ttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaat 139  Q
    |||| ||||||||||||||||| || ||||   ||||||||||||||||||||  ||| |||||||| |||| ||||||||||||||    
T  4552186 ttttgaaaatacaagtcaaacaaatataaaagacataactacacaattttcaacgtaataattactatttttagatgcttaaacaat 4552272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 40043309 - 40043399
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaa 146  Q
    ||||||||||  || ||| | ||||||| ||||||| |||||||||||| |||||||| |||||||||||||||| || |||||||| ||||    
T  40043309 ttaaaaatacttgttaaatatatgtaaaaatcataattacacaattttctatataaaagttactacttttggatg-ttgaacaatgttttaa 40043399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 12047294 - 12047236
Alignment:
Q  61 atacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattacta 119  Q
    ||||||||||||||||||||||  ||||||||||||||||||  || ||||||||||||    
T  12047294 atacaagtcaaacacatgtaaaagtcataactacacaatttttcatgtaaaaattacta 12047236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 40287554 - 40287632
Alignment:
Q  39 aaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattacta 119  Q
    |||||||||||||| ||  ||||||||| ||||||||||||||| || ||||||||| |||||||| | |||||| |||||    
T  40287554 aaaagaaactttgtctt--aaaatacaaatcaaacacatgtaaaaatgataactacataattttcagtgtaaaaactacta 40287632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 11818196 - 11818248
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataa 110  Q
    ||||||||||||||| |||||||||  ||||||||| ||||||||||||||||    
T  11818196 aaaatacaagtcaaaaacatgtaaaagtcataactatacaattttcaatataa 11818248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 41834847 - 41834776
Alignment:
Q  55 ttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttgg 126  Q
    |||||||||||||||||||| || ||||  | |||| ||||||||||||||  |||||||||||| ||||||    
T  41834847 ttaaaaatacaagtcaaacatatataaaagtaataattacacaattttcaacgtaaaaattactagttttgg 41834776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 32213521 - 32213627
Alignment:
Q  30 aaacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatg 129  Q
    ||||||| ||||||||| | ||| || ||||||| ||||||||| || | ||||  ||||| || ||||||||||||  ||||||||||||||||  |||    
T  32213521 aaacccataaaaagaaattatgtctt-aaaaatataagtcaaacgcacgaaaat--cataattatacaattttcaatgcaaaaattactacttttaaatg 32213617  T
Q  130 cttaaacaat 139  Q
    ||||||||||    
T  32213618 cttaaacaat 32213627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 3527790 - 3527669
Alignment:
Q  34 ccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgctta 133  Q
    ||||||||||||| |||||| |  ||| ||||||||||||| || ||||  |||||||||||||||||  |  |||||| |||||||||||  || ||||    
T  3527790 ccacaaaaagaaattttgttatggaaa-tacaagtcaaacatatataaaagtcataactacacaatttcta--ataaaagttactacttttatatactta 3527694  T
Q  134 aacaatgtattaagggcatttgtta 158  Q
    |||||||  ||||||  ||||||||    
T  3527693 aacaatgctttaaggatatttgtta 3527669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 13029044 - 13028976
Alignment:
Q  87 ataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttg 155  Q
    |||||||||||||||| ||| ||||| |||||||||||  || ||||||||||||  |||| |||||||    
T  13029044 ataactacacaatttttaatgtaaaagttactacttttaaatacttaaacaatgttataagagcatttg 13028976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 1751005 - 1750922
Alignment:
Q  52 tttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    |||||||||||| |||||||||| || |||| || |||| || ||||||| |||| ||||| || |||| ||| ||||||||||    
T  1751005 tttttaaaaatataagtcaaacatatataaaaattataaatatacaatttccaatgtaaaagttgctacgttttgatgcttaaa 1750922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 3831464 - 3831361
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    ||||||||| |  ||||||||| ||  ||||||||  ||||||| ||||  ||||||| |||||||| |||||||||||||||   | |||||| |||||    
T  3831464 aaaatacaaattcaacacatgttaaagtcataactgtacaatttccaatgcaaaaatttctacttttagatgcttaaacaatggccttagggcacttgtt 3831365  T
Q  158 agca 161  Q
    ||||    
T  3831364 agca 3831361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 4044884 - 4044967
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    ||||||||||||||||| || || |  ||||||||| ||||||| ||| |||| | |||||| || | ||||||||||||||||    
T  4044884 aaaatacaagtcaaacatatatacaagtcataactatacaatttccaagataacagttactaattatagatgcttaaacaatgt 4044967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 38902251 - 38902169
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    ||||| ||||||||||| || ||||  |||||| ||||||||||||||| | |||| || || |||| ||||||||||||||||    
T  38902251 aaaattcaagtcaaacatatataaaagtcataattacacaattttcaatgt-aaaagtattatttttagatgcttaaacaatgt 38902169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 38067757 - 38067711
Alignment:
Q  95 acaattttcaatataaaaattactacttttggatgcttaaacaatgt 141  Q
    ||||||||||||| |||| ||| ||||||| ||||||||||||||||    
T  38067757 acaattttcaatacaaaagttaatacttttagatgcttaaacaatgt 38067711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 38788711 - 38788792
Alignment:
Q  59 aaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatg 140  Q
    |||| |||||||||||| ||| ||  ||||||||| ||||||||| || ||||| || ||||||||| |  |||||||||||    
T  38788711 aaattcaagtcaaacacttgtgaaagtcataactaaacaattttccatgtaaaagttgctacttttgaaaacttaaacaatg 38788792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 5596361 - 5596289
Alignment:
Q  63 acaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    |||||||||||||  ||||| || |||| || ||||| ||||| |||||| |||||||||||| ||| |||||    
T  5596361 acaagtcaaacacgcgtaaaaattataaatatacaatattcaaaataaaagttactacttttgaatgtttaaa 5596289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 45596035 - 45596099
Alignment:
Q  53 ttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattac 117  Q
    |||| ||||||||||| ||| | |||||||  | |||||||||||||||| ||||||||| ||||    
T  45596035 ttttgaaaatacaagtgaaatatatgtaaaagttataactacacaatttttaatataaaatttac 45596099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 171671 - 171568
Alignment:
Q  58 aaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaacaatgtattaagggcatttgtt 157  Q
    |||||||||||||||||||||| ||  ||| ||||  |||||||| |||  |||| || |||||||| |||||||||||||||| || | |||| |||||    
T  171671 aaaatacaagtcaaacacatgttaaagtcacaactgaacaatttttaatgcaaaagttgctacttttagatgcttaaacaatgtttttaaggcacttgtt 171572  T
Q  158 agca 161  Q
    ||||    
T  171571 agca 171568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 28476 - 28547
Alignment:
Q  31 aacccacaaaaagaaactttgtttttaaaaatacaagtcaaacacatgtaaatatcataactacacaatttt 102  Q
    ||||||| |||| ||| |||||||| ||||||| |||||||||||||||||| || |||| ||| |||||||    
T  28476 aacccacgaaaacaaattttgttttaaaaaatataagtcaaacacatgtaaaaattataattacgcaatttt 28547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 23246 - 23328
Alignment:
Q  53 ttttaaaaatacaagtcaaacacatgtaaatatcataactacacaattttcaatataaaaattactacttttggatgcttaaa 135  Q
    |||| ||||||| | ||||||||||  ||| || |||||||||||||||||||| |||| |||||| |  || ||||||||||    
T  23246 ttttgaaaatactaatcaaacacataaaaaaattataactacacaattttcaatgtaaatattactccagttagatgcttaaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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