View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_low_27 (Length: 228)
Name: NF10727_low_27
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 11685472 - 11685328
Alignment:
| Q |
1 |
tttgtgttagattactttactaagatgaaatgactttcggaggaacttaatactcatcgaccaatgcctatttgcacttgtgttcatcaaagtcgatgtg |
100 |
Q |
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| T |
11685472 |
tttgtgttagattactttactaagatgaaatgaatttcggaggaacttaatactcatcgaccaatgcctatttgcacttgtgttcatcaaagtcgatgtg |
11685373 |
T |
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| Q |
101 |
aatcaatgcgttttgcccgtgattttacaaagtcgtgtaatggat |
145 |
Q |
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| T |
11685372 |
aatcaatgtgttttgtccgtgattctacaaagtcgtgtaatggat |
11685328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11715601 - 11715724
Alignment:
| Q |
1 |
tttgtgttagattactttactaagatgaaatgactttcggaggaacttaatactcatcgaccaatgcctatttgcacttgtgttcatcaaagtcgatgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11715601 |
tttgtgttagattactttactaagatgaaatgaatttcggaggaacttaatactcatcgaccaatgcctatttgcacttgtgttcatcaaagtcgatgtg |
11715700 |
T |
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| Q |
101 |
aatcaatgcgttttgcccgtgatt |
124 |
Q |
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| T |
11715701 |
aatcaatgtgttttgtccgtgatt |
11715724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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