View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10727_low_29 (Length: 211)
Name: NF10727_low_29
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 19106155 - 19105968
Alignment:
| Q |
17 |
ataagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19106155 |
ataagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaa-ttggagtttagtattgacaatatcagatataggttatatcttctatgtaa |
19106057 |
T |
|
| Q |
117 |
caaaattatcatctataaaatggagaaagaaacctaacactattcaacttcctgtgtaacttcgaagttcctaattgttcctatgcttc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19106056 |
caaaattatcatctataaaatggagaaagaaacctaacactattcaacttcatgtgtaacttcgaacttcctaattgttcctatgcttc |
19105968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 2350082 - 2349891
Alignment:
| Q |
17 |
ataagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttc----tat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2350082 |
ataagtaaaggaagaagtatgtgctgccgctcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatatat |
2349983 |
T |
|
| Q |
113 |
gtaacaaaattatcatctataaaatggagaaagaaacctaacactattcaacttcctgtgtaacttcgaagttcctaattgttcctatgctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
2349982 |
gtaacaaaattatcatctataaaatggagaaagaaacctaacacaattaaacttccagtgtaacttcgaagctcctaattgttcctatgctt |
2349891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 20922474 - 20922675
Alignment:
| Q |
17 |
ataagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20922474 |
ataagtaaaggaagaagtatgtgctgccactcaaatattaaacatcgaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaa |
20922573 |
T |
|
| Q |
117 |
caaaattatcatct-------------ataaaatggagaaagaaacctaacactattcaacttcctgtgtaacttcgaagttcctaattgttcctatgct |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20922574 |
caaaattatcatctataaaatgaatcgataaaatggagaaagaaacctaacactattcaacttcctgtgtaacttcgaagttcctaattgttcctatgct |
20922673 |
T |
|
| Q |
204 |
tc |
205 |
Q |
| |
|
|| |
|
|
| T |
20922674 |
tc |
20922675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 32594441 - 32594240
Alignment:
| Q |
17 |
ataagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32594441 |
ataagtaaaggaagaagtatgtgctgccgctcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaa |
32594342 |
T |
|
| Q |
117 |
caaaattatcatctataa-------------aatggagaaagaaacctaacactattcaacttcctgtgtaacttcgaagttcctaattgttcctatgct |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32594341 |
caaaattatcatctataaaatgaatcgataaaatggagaaagaaacctaacacaattcaacttcctgtgtaacttcgaagctcctaattgttcctatgct |
32594242 |
T |
|
| Q |
204 |
tc |
205 |
Q |
| |
|
|| |
|
|
| T |
32594241 |
tc |
32594240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 32774948 - 32774900
Alignment:
| Q |
54 |
ttaaacatctaaattggagtttagtattgacaatatcagatataggttc |
102 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32774948 |
ttaaacatccaaattggagtttattattgacaatatcagatataggttc |
32774900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University